miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22890 3' -55.7 NC_005137.2 + 32470 0.67 0.825205
Target:  5'- aAAACGCAGCauCGCGcCAGCaauuuGUUaACCCa -3'
miRNA:   3'- -UUUGCGUUG--GCGC-GUCGg----CAAgUGGG- -5'
22890 3' -55.7 NC_005137.2 + 122241 0.68 0.770436
Target:  5'- ---aGCAGCagacaaGCGuCAGCCGUcUCGCCg -3'
miRNA:   3'- uuugCGUUGg-----CGC-GUCGGCA-AGUGGg -5'
22890 3' -55.7 NC_005137.2 + 96065 0.68 0.779938
Target:  5'- cGAACGCuACCGCGUuauGCUGU--AUCCg -3'
miRNA:   3'- -UUUGCGuUGGCGCGu--CGGCAagUGGG- -5'
22890 3' -55.7 NC_005137.2 + 96413 0.68 0.789303
Target:  5'- --cCGCuacCCGCGCGGCgacgCGCCCg -3'
miRNA:   3'- uuuGCGuu-GGCGCGUCGgcaaGUGGG- -5'
22890 3' -55.7 NC_005137.2 + 73775 0.68 0.807584
Target:  5'- uGGCGCGG--GCGUAGCCucGUUCGCCa -3'
miRNA:   3'- uUUGCGUUggCGCGUCGG--CAAGUGGg -5'
22890 3' -55.7 NC_005137.2 + 31677 0.67 0.816481
Target:  5'- cGGACGaCAccGCCGCGUGGuuGUgcggUCGCaCCg -3'
miRNA:   3'- -UUUGC-GU--UGGCGCGUCggCA----AGUG-GG- -5'
22890 3' -55.7 NC_005137.2 + 106679 0.67 0.816481
Target:  5'- --uUGCAACCGacaaCGGCCGU--GCCCg -3'
miRNA:   3'- uuuGCGUUGGCgc--GUCGGCAagUGGG- -5'
22890 3' -55.7 NC_005137.2 + 7188 0.67 0.816481
Target:  5'- cAGCGCAuuucgaACCgGCGCGuGCCGUcuuccaauaacUCAUCCc -3'
miRNA:   3'- uUUGCGU------UGG-CGCGU-CGGCA-----------AGUGGG- -5'
22890 3' -55.7 NC_005137.2 + 99939 0.67 0.819992
Target:  5'- cGACGCGcacgcauguuggacaACgGcCGCGGCCGcgCGCCUc -3'
miRNA:   3'- uUUGCGU---------------UGgC-GCGUCGGCaaGUGGG- -5'
22890 3' -55.7 NC_005137.2 + 31190 0.69 0.741201
Target:  5'- cGGCGCAACCG-GC--CCGcgUCGCCCu -3'
miRNA:   3'- uUUGCGUUGGCgCGucGGCa-AGUGGG- -5'
22890 3' -55.7 NC_005137.2 + 119715 0.69 0.741201
Target:  5'- -uACGCAucccGCCGCGCAGC-----GCCCa -3'
miRNA:   3'- uuUGCGU----UGGCGCGUCGgcaagUGGG- -5'
22890 3' -55.7 NC_005137.2 + 115752 0.69 0.731245
Target:  5'- cAACGCAACgugcgCGCGCGGC-GUUUuCCCu -3'
miRNA:   3'- uUUGCGUUG-----GCGCGUCGgCAAGuGGG- -5'
22890 3' -55.7 NC_005137.2 + 130850 0.74 0.457524
Target:  5'- aGAACGCGuuggaCGCGCAGCCcg-CGCCUg -3'
miRNA:   3'- -UUUGCGUug---GCGCGUCGGcaaGUGGG- -5'
22890 3' -55.7 NC_005137.2 + 100045 0.73 0.495899
Target:  5'- cGACGCGGC-GCGCGGCgCGUUCAgCa -3'
miRNA:   3'- uUUGCGUUGgCGCGUCG-GCAAGUgGg -5'
22890 3' -55.7 NC_005137.2 + 106710 0.72 0.566202
Target:  5'- --cCGCAGCCGCaaacGCcGCCGUUugauugCGCCCa -3'
miRNA:   3'- uuuGCGUUGGCG----CGuCGGCAA------GUGGG- -5'
22890 3' -55.7 NC_005137.2 + 3468 0.71 0.607555
Target:  5'- gAAACGCAACCucaGCGCGGCCGa-CAUUg -3'
miRNA:   3'- -UUUGCGUUGG---CGCGUCGGCaaGUGGg -5'
22890 3' -55.7 NC_005137.2 + 88503 0.71 0.61796
Target:  5'- gGAAUGUcGCCGCGCAGCaag-CGCCg -3'
miRNA:   3'- -UUUGCGuUGGCGCGUCGgcaaGUGGg -5'
22890 3' -55.7 NC_005137.2 + 116884 0.7 0.659607
Target:  5'- -uGCGCugccCCGCGacuugacaaCGGCCG-UCACCCg -3'
miRNA:   3'- uuUGCGuu--GGCGC---------GUCGGCaAGUGGG- -5'
22890 3' -55.7 NC_005137.2 + 43809 0.7 0.690631
Target:  5'- ---aGCGACgGCacgaGCAGCCGcccgCGCCCg -3'
miRNA:   3'- uuugCGUUGgCG----CGUCGGCaa--GUGGG- -5'
22890 3' -55.7 NC_005137.2 + 13705 0.69 0.711077
Target:  5'- uGGGCGCGACCGCGUuguuGCUauuUUUugCCg -3'
miRNA:   3'- -UUUGCGUUGGCGCGu---CGGc--AAGugGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.