miRNA display CGI


Results 1 - 20 of 74 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22890 3' -55.7 NC_005137.2 + 50778 1.08 0.002582
Target:  5'- cAAACGCAACCGCGCAGCCGUUCACCCc -3'
miRNA:   3'- -UUUGCGUUGGCGCGUCGGCAAGUGGG- -5'
22890 3' -55.7 NC_005137.2 + 52283 0.8 0.208236
Target:  5'- -cGCGCAcuuaucGCCGaagcCGCAGCCGUUCugCCa -3'
miRNA:   3'- uuUGCGU------UGGC----GCGUCGGCAAGugGG- -5'
22890 3' -55.7 NC_005137.2 + 61742 0.78 0.266506
Target:  5'- --cCGCGACCGCGCAcGCCGUccaguuUCauaGCCCa -3'
miRNA:   3'- uuuGCGUUGGCGCGU-CGGCA------AG---UGGG- -5'
22890 3' -55.7 NC_005137.2 + 33018 0.78 0.286392
Target:  5'- cGGGCGCAcccacGCCGCGCGcCCGUUUugCCu -3'
miRNA:   3'- -UUUGCGU-----UGGCGCGUcGGCAAGugGG- -5'
22890 3' -55.7 NC_005137.2 + 109427 0.76 0.361027
Target:  5'- --cCGCGGCCuauGCGCGGCCcaucggUCACCCa -3'
miRNA:   3'- uuuGCGUUGG---CGCGUCGGca----AGUGGG- -5'
22890 3' -55.7 NC_005137.2 + 130850 0.74 0.457524
Target:  5'- aGAACGCGuuggaCGCGCAGCCcg-CGCCUg -3'
miRNA:   3'- -UUUGCGUug---GCGCGUCGGcaaGUGGG- -5'
22890 3' -55.7 NC_005137.2 + 100045 0.73 0.495899
Target:  5'- cGACGCGGC-GCGCGGCgCGUUCAgCa -3'
miRNA:   3'- uUUGCGUUGgCGCGUCG-GCAAGUgGg -5'
22890 3' -55.7 NC_005137.2 + 85045 0.73 0.505721
Target:  5'- --cUGC-ACCGCGUAGCCGUuuUUACUCu -3'
miRNA:   3'- uuuGCGuUGGCGCGUCGGCA--AGUGGG- -5'
22890 3' -55.7 NC_005137.2 + 98446 0.72 0.555966
Target:  5'- aAAGCGCAagcaGCCGCGUgcacGGCCGUaUGCCg -3'
miRNA:   3'- -UUUGCGU----UGGCGCG----UCGGCAaGUGGg -5'
22890 3' -55.7 NC_005137.2 + 80915 0.72 0.566202
Target:  5'- -cGCGCAuUUGCGCGGCCGUggaggCGCgCg -3'
miRNA:   3'- uuUGCGUuGGCGCGUCGGCAa----GUGgG- -5'
22890 3' -55.7 NC_005137.2 + 106710 0.72 0.566202
Target:  5'- --cCGCAGCCGCaaacGCcGCCGUUugauugCGCCCa -3'
miRNA:   3'- uuuGCGUUGGCG----CGuCGGCAA------GUGGG- -5'
22890 3' -55.7 NC_005137.2 + 9226 0.72 0.576486
Target:  5'- uAGCGCAACaaGUGCcGCCGgcaCACCCa -3'
miRNA:   3'- uUUGCGUUGg-CGCGuCGGCaa-GUGGG- -5'
22890 3' -55.7 NC_005137.2 + 15710 0.71 0.606516
Target:  5'- cGGCGCAAUCGCccGCAGCuCGUccgcugcUCGCCa -3'
miRNA:   3'- uUUGCGUUGGCG--CGUCG-GCA-------AGUGGg -5'
22890 3' -55.7 NC_005137.2 + 85551 0.71 0.607555
Target:  5'- cAAACGCGugCGCGU-GCUGcgcCGCCCg -3'
miRNA:   3'- -UUUGCGUugGCGCGuCGGCaa-GUGGG- -5'
22890 3' -55.7 NC_005137.2 + 3468 0.71 0.607555
Target:  5'- gAAACGCAACCucaGCGCGGCCGa-CAUUg -3'
miRNA:   3'- -UUUGCGUUGG---CGCGUCGGCaaGUGGg -5'
22890 3' -55.7 NC_005137.2 + 88503 0.71 0.61796
Target:  5'- gGAAUGUcGCCGCGCAGCaag-CGCCg -3'
miRNA:   3'- -UUUGCGuUGGCGCGUCGgcaaGUGGg -5'
22890 3' -55.7 NC_005137.2 + 31053 0.71 0.628376
Target:  5'- -cGCGCGGCCGCG--GCCGUUguCCa -3'
miRNA:   3'- uuUGCGUUGGCGCguCGGCAAguGGg -5'
22890 3' -55.7 NC_005137.2 + 22855 0.71 0.628376
Target:  5'- -cGCGCAuACCGaCGCcGCCGc-CGCCCg -3'
miRNA:   3'- uuUGCGU-UGGC-GCGuCGGCaaGUGGG- -5'
22890 3' -55.7 NC_005137.2 + 5883 0.71 0.628376
Target:  5'- aAGACGUucgAGCgGCGCGGCCcGccgcuugaguuaUUCACCCg -3'
miRNA:   3'- -UUUGCG---UUGgCGCGUCGG-C------------AAGUGGG- -5'
22890 3' -55.7 NC_005137.2 + 25484 0.71 0.638795
Target:  5'- aAAACGguGCCa-GCAGCCGUguggCGCCg -3'
miRNA:   3'- -UUUGCguUGGcgCGUCGGCAa---GUGGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.