Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22891 | 3' | -61 | NC_005137.2 | + | 130870 | 0.67 | 0.646518 |
Target: 5'- cCCGcGCCugaauuguaCGCCgCGGACGCGCCGcaguuuuACGUa -3' miRNA: 3'- -GGC-UGG---------GCGG-GCUUGCGCGGC-------UGCAc -5' |
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22891 | 3' | -61 | NC_005137.2 | + | 129356 | 0.68 | 0.608385 |
Target: 5'- aCCGACCgaGCCCaAACGUGCCGuuuuGCa-- -3' miRNA: 3'- -GGCUGGg-CGGGcUUGCGCGGC----UGcac -5' |
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22891 | 3' | -61 | NC_005137.2 | + | 124025 | 0.67 | 0.676735 |
Target: 5'- aCCG-CUCGUCCGugUGCGCCagcauCGUGg -3' miRNA: 3'- -GGCuGGGCGGGCuuGCGCGGcu---GCAC- -5' |
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22891 | 3' | -61 | NC_005137.2 | + | 123702 | 0.7 | 0.484941 |
Target: 5'- aCCGcauCCUGCCCGGGCaaaGCGaCCGcaACGUGu -3' miRNA: 3'- -GGCu--GGGCGGGCUUG---CGC-GGC--UGCAC- -5' |
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22891 | 3' | -61 | NC_005137.2 | + | 110815 | 0.74 | 0.276458 |
Target: 5'- aUCGACgCCGCCCGccGACGCGCaagaGuCGUGc -3' miRNA: 3'- -GGCUG-GGCGGGC--UUGCGCGg---CuGCAC- -5' |
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22891 | 3' | -61 | NC_005137.2 | + | 110628 | 0.69 | 0.54079 |
Target: 5'- aCGGCCgUGCaCaAACGCGCCGACGg- -3' miRNA: 3'- gGCUGG-GCGgGcUUGCGCGGCUGCac -5' |
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22891 | 3' | -61 | NC_005137.2 | + | 108559 | 0.66 | 0.7341 |
Target: 5'- gCCGACggagcgcacgUUGCCCaAAU-CGCCGACGUGa -3' miRNA: 3'- -GGCUG----------GGCGGGcUUGcGCGGCUGCAC- -5' |
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22891 | 3' | -61 | NC_005137.2 | + | 100209 | 0.67 | 0.657263 |
Target: 5'- aCGugUUGCUgGuGCGCGUCGACGa- -3' miRNA: 3'- gGCugGGCGGgCuUGCGCGGCUGCac -5' |
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22891 | 3' | -61 | NC_005137.2 | + | 100143 | 0.66 | 0.7341 |
Target: 5'- aCaGCUCGCCCacguacGGGCGCGCCGGguCGUc -3' miRNA: 3'- gGcUGGGCGGG------CUUGCGCGGCU--GCAc -5' |
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22891 | 3' | -61 | NC_005137.2 | + | 99753 | 0.69 | 0.559902 |
Target: 5'- -aGGCCCGagUUGAGCGCGCaCGACGc- -3' miRNA: 3'- ggCUGGGCg-GGCUUGCGCG-GCUGCac -5' |
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22891 | 3' | -61 | NC_005137.2 | + | 96412 | 0.68 | 0.598631 |
Target: 5'- aCCGcuACCCGCgCGGcgACGCGCCcgccGCGUu -3' miRNA: 3'- -GGC--UGGGCGgGCU--UGCGCGGc---UGCAc -5' |
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22891 | 3' | -61 | NC_005137.2 | + | 95589 | 0.66 | 0.696073 |
Target: 5'- gCCGuuuugCCGCCCGcGCacuGUGCgCGACGUGc -3' miRNA: 3'- -GGCug---GGCGGGCuUG---CGCG-GCUGCAC- -5' |
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22891 | 3' | -61 | NC_005137.2 | + | 95487 | 0.71 | 0.40682 |
Target: 5'- aCGGCCgGCCgGAACgauuGCGuaGACGUGg -3' miRNA: 3'- gGCUGGgCGGgCUUG----CGCggCUGCAC- -5' |
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22891 | 3' | -61 | NC_005137.2 | + | 95481 | 0.67 | 0.657263 |
Target: 5'- aCCGgucggaugcGCgCCGCaCGGGCGCaucGCUGACGUGg -3' miRNA: 3'- -GGC---------UG-GGCGgGCUUGCG---CGGCUGCAC- -5' |
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22891 | 3' | -61 | NC_005137.2 | + | 84570 | 0.66 | 0.7341 |
Target: 5'- gUCGGCgCGUUCGGGCGgGUCGggcACGUGc -3' miRNA: 3'- -GGCUGgGCGGGCUUGCgCGGC---UGCAC- -5' |
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22891 | 3' | -61 | NC_005137.2 | + | 81785 | 0.7 | 0.494069 |
Target: 5'- aCGGCCCGCCCGAAgccaagUGCGCaaacaacACGUu -3' miRNA: 3'- gGCUGGGCGGGCUU------GCGCGgc-----UGCAc -5' |
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22891 | 3' | -61 | NC_005137.2 | + | 71727 | 0.67 | 0.664089 |
Target: 5'- aCGACCUGCCCagccauaaagcuaaGAGCGUGCgGAaaaaGUu -3' miRNA: 3'- gGCUGGGCGGG--------------CUUGCGCGgCUg---CAc -5' |
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22891 | 3' | -61 | NC_005137.2 | + | 69487 | 0.66 | 0.705673 |
Target: 5'- aCGACCCGUauUCGcuaAACGCGuuGACa-- -3' miRNA: 3'- gGCUGGGCG--GGC---UUGCGCggCUGcac -5' |
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22891 | 3' | -61 | NC_005137.2 | + | 64958 | 0.68 | 0.608385 |
Target: 5'- ----aCCGCCa--ACGUGCCGACGUGc -3' miRNA: 3'- ggcugGGCGGgcuUGCGCGGCUGCAC- -5' |
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22891 | 3' | -61 | NC_005137.2 | + | 56661 | 0.66 | 0.7341 |
Target: 5'- gCGACCuCGUgcuugCCGAcgGCGCuGUgGACGUGa -3' miRNA: 3'- gGCUGG-GCG-----GGCU--UGCG-CGgCUGCAC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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