miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22893 3' -59.8 NC_005137.2 + 10724 0.66 0.739435
Target:  5'- aCCGCAucGCgCACGCGUCGgCCAg---- -3'
miRNA:   3'- aGGCGU--UG-GUGCGCAGCgGGUgccug -5'
22893 3' -59.8 NC_005137.2 + 12443 0.66 0.710421
Target:  5'- gUCCGUGAUCAgGCGcuuucaUGUCCACGGuCg -3'
miRNA:   3'- -AGGCGUUGGUgCGCa-----GCGGGUGCCuG- -5'
22893 3' -59.8 NC_005137.2 + 15874 0.7 0.475018
Target:  5'- gCCGcCggUCACGUGcCGCCCGaauuUGGACa -3'
miRNA:   3'- aGGC-GuuGGUGCGCaGCGGGU----GCCUG- -5'
22893 3' -59.8 NC_005137.2 + 18257 0.67 0.680833
Target:  5'- aCUGCGGCgC-CGCGUcCGUuaaCACGGACa -3'
miRNA:   3'- aGGCGUUG-GuGCGCA-GCGg--GUGCCUG- -5'
22893 3' -59.8 NC_005137.2 + 20946 0.71 0.430109
Target:  5'- aCCGCGACgACuGCGUCugcuGCCUGCGGcGCg -3'
miRNA:   3'- aGGCGUUGgUG-CGCAG----CGGGUGCC-UG- -5'
22893 3' -59.8 NC_005137.2 + 28258 0.71 0.421428
Target:  5'- cUCGCAcGCCAcCGCGUCGUCUACGuGCu -3'
miRNA:   3'- aGGCGU-UGGU-GCGCAGCGGGUGCcUG- -5'
22893 3' -59.8 NC_005137.2 + 30977 0.67 0.690745
Target:  5'- gCCGCGucggACCGCGUGcuugCGCaCCGCuGGAg -3'
miRNA:   3'- aGGCGU----UGGUGCGCa---GCG-GGUG-CCUg -5'
22893 3' -59.8 NC_005137.2 + 31192 0.74 0.284699
Target:  5'- -gCGCAACCGgccCGCGUCGCCCuuguaccaGCGGuCg -3'
miRNA:   3'- agGCGUUGGU---GCGCAGCGGG--------UGCCuG- -5'
22893 3' -59.8 NC_005137.2 + 31656 0.71 0.447779
Target:  5'- -aCGCGACCACGCugUGCauaGCGGACg -3'
miRNA:   3'- agGCGUUGGUGCGcaGCGgg-UGCCUG- -5'
22893 3' -59.8 NC_005137.2 + 34587 0.75 0.265636
Target:  5'- -aCGCGGCgGgCGCGUCGCCgCGCGGGu -3'
miRNA:   3'- agGCGUUGgU-GCGCAGCGG-GUGCCUg -5'
22893 3' -59.8 NC_005137.2 + 35167 0.67 0.660901
Target:  5'- --gGCAACaauC-CGUCGCCCGCuGGGCa -3'
miRNA:   3'- aggCGUUGgu-GcGCAGCGGGUG-CCUG- -5'
22893 3' -59.8 NC_005137.2 + 38085 0.67 0.680833
Target:  5'- aCUGaCcGCCACGgacaaGCCCACGGGCa -3'
miRNA:   3'- aGGC-GuUGGUGCgcag-CGGGUGCCUG- -5'
22893 3' -59.8 NC_005137.2 + 39818 0.67 0.670882
Target:  5'- -gUGCAACCAaaCGcCGCgCCACGGAa -3'
miRNA:   3'- agGCGUUGGUgcGCaGCG-GGUGCCUg -5'
22893 3' -59.8 NC_005137.2 + 42241 0.66 0.748938
Target:  5'- -gCGCGAgCACGCGUUGCCUcucaacuacaACGaGCu -3'
miRNA:   3'- agGCGUUgGUGCGCAGCGGG----------UGCcUG- -5'
22893 3' -59.8 NC_005137.2 + 43028 1.1 0.000982
Target:  5'- aUCCGCAACCACGCGUCGCCCACGGACg -3'
miRNA:   3'- -AGGCGUUGGUGCGCAGCGGGUGCCUG- -5'
22893 3' -59.8 NC_005137.2 + 43923 0.69 0.570979
Target:  5'- gCCGCGugCACgGCGUucaUGCCUucggcaauuucaACGGGCg -3'
miRNA:   3'- aGGCGUugGUG-CGCA---GCGGG------------UGCCUG- -5'
22893 3' -59.8 NC_005137.2 + 47181 0.73 0.333335
Target:  5'- gCUGCGAaacacaauguCC-CGC-UCGCCCACGGACa -3'
miRNA:   3'- aGGCGUU----------GGuGCGcAGCGGGUGCCUG- -5'
22893 3' -59.8 NC_005137.2 + 48235 0.66 0.720168
Target:  5'- uUCCGUugcuGCCGCcguuacCGUCGCCCACa--- -3'
miRNA:   3'- -AGGCGu---UGGUGc-----GCAGCGGGUGccug -5'
22893 3' -59.8 NC_005137.2 + 51270 0.72 0.404389
Target:  5'- -aCGCGGCCAuUGCGUCGCaauuugCgGCGGGCa -3'
miRNA:   3'- agGCGUUGGU-GCGCAGCG------GgUGCCUG- -5'
22893 3' -59.8 NC_005137.2 + 52069 0.66 0.729842
Target:  5'- -aCGCGAa-ACGCGUUGUCgCACGGuACa -3'
miRNA:   3'- agGCGUUggUGCGCAGCGG-GUGCC-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.