Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22896 | 3' | -58.5 | NC_005137.2 | + | 7955 | 0.75 | 0.277756 |
Target: 5'- gCGCCGCGACcucgACCGgcgGCCCGUGUUc -3' miRNA: 3'- aGUGGCGCUGcg--UGGUa--CGGGCACAG- -5' |
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22896 | 3' | -58.5 | NC_005137.2 | + | 8466 | 0.7 | 0.56482 |
Target: 5'- -aAUUGCGACGCGCCGauaacgUGCCCGaUG-Ca -3' miRNA: 3'- agUGGCGCUGCGUGGU------ACGGGC-ACaG- -5' |
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22896 | 3' | -58.5 | NC_005137.2 | + | 11325 | 0.73 | 0.380566 |
Target: 5'- gCugUGUGcGCGCGCCGUGCCUGUuUCg -3' miRNA: 3'- aGugGCGC-UGCGUGGUACGGGCAcAG- -5' |
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22896 | 3' | -58.5 | NC_005137.2 | + | 13153 | 0.68 | 0.645716 |
Target: 5'- gUUGCCG-GACGCGuCCGUGCUgGUGg- -3' miRNA: 3'- -AGUGGCgCUGCGU-GGUACGGgCACag -5' |
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22896 | 3' | -58.5 | NC_005137.2 | + | 13442 | 0.7 | 0.515534 |
Target: 5'- gCACCgGCGGCGCACUuUGCCgGUa-- -3' miRNA: 3'- aGUGG-CGCUGCGUGGuACGGgCAcag -5' |
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22896 | 3' | -58.5 | NC_005137.2 | + | 18592 | 0.67 | 0.72587 |
Target: 5'- aCGCCGUacuugcacaauGGCGCGCCGUGCgCGa--- -3' miRNA: 3'- aGUGGCG-----------CUGCGUGGUACGgGCacag -5' |
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22896 | 3' | -58.5 | NC_005137.2 | + | 21224 | 0.72 | 0.422966 |
Target: 5'- uUUACguggGCGACGCugCggGCCgCGUGUCa -3' miRNA: 3'- -AGUGg---CGCUGCGugGuaCGG-GCACAG- -5' |
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22896 | 3' | -58.5 | NC_005137.2 | + | 24426 | 0.71 | 0.477395 |
Target: 5'- aCACCGCGGCGCcguaaauguccACCAUGUauugaCCGUuGUUa -3' miRNA: 3'- aGUGGCGCUGCG-----------UGGUACG-----GGCA-CAG- -5' |
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22896 | 3' | -58.5 | NC_005137.2 | + | 30746 | 0.75 | 0.304685 |
Target: 5'- -uGCCGCGACGCGC---GCCCGUG-Cg -3' miRNA: 3'- agUGGCGCUGCGUGguaCGGGCACaG- -5' |
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22896 | 3' | -58.5 | NC_005137.2 | + | 31740 | 0.66 | 0.791975 |
Target: 5'- gCACCGUcacCGUuaaACUGUGCCCGUGg- -3' miRNA: 3'- aGUGGCGcu-GCG---UGGUACGGGCACag -5' |
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22896 | 3' | -58.5 | NC_005137.2 | + | 34674 | 0.72 | 0.431781 |
Target: 5'- cCACCGCaccagcaaGCGCCGUGggguCCCGUGUCc -3' miRNA: 3'- aGUGGCGcug-----CGUGGUAC----GGGCACAG- -5' |
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22896 | 3' | -58.5 | NC_005137.2 | + | 34965 | 0.67 | 0.744328 |
Target: 5'- gUCGCUaaguuggGCGGCGguggcuugaaaCACCAUGUCCGcGUCu -3' miRNA: 3'- -AGUGG-------CGCUGC-----------GUGGUACGGGCaCAG- -5' |
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22896 | 3' | -58.5 | NC_005137.2 | + | 35118 | 1.1 | 0.001196 |
Target: 5'- gUCACCGCGACGCACCAUGCCCGUGUCg -3' miRNA: 3'- -AGUGGCGCUGCGUGGUACGGGCACAG- -5' |
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22896 | 3' | -58.5 | NC_005137.2 | + | 35739 | 0.68 | 0.676084 |
Target: 5'- gUUACCGUc-CGCAUCGUGCaucugcacuaCCGUGUCu -3' miRNA: 3'- -AGUGGCGcuGCGUGGUACG----------GGCACAG- -5' |
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22896 | 3' | -58.5 | NC_005137.2 | + | 35835 | 0.67 | 0.742401 |
Target: 5'- gUCACCGCG-UGCcuauuacaaacuuuACCGUGCCCucGUUg -3' miRNA: 3'- -AGUGGCGCuGCG--------------UGGUACGGGcaCAG- -5' |
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22896 | 3' | -58.5 | NC_005137.2 | + | 37545 | 0.75 | 0.290977 |
Target: 5'- gCGCUgGCG-CGCACCGUGCCCGUa-- -3' miRNA: 3'- aGUGG-CGCuGCGUGGUACGGGCAcag -5' |
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22896 | 3' | -58.5 | NC_005137.2 | + | 44918 | 0.73 | 0.380566 |
Target: 5'- cUCGUCGCGGCGUACCAUGaCgCCGUGc- -3' miRNA: 3'- -AGUGGCGCUGCGUGGUAC-G-GGCACag -5' |
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22896 | 3' | -58.5 | NC_005137.2 | + | 54489 | 0.67 | 0.745291 |
Target: 5'- -aACUGcCGACGgaagugcaCGCCGUugaauagacGCCCGUGUCa -3' miRNA: 3'- agUGGC-GCUGC--------GUGGUA---------CGGGCACAG- -5' |
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22896 | 3' | -58.5 | NC_005137.2 | + | 61098 | 0.69 | 0.594992 |
Target: 5'- gCGCCGCGuaaaaaacGCGCACCAacGCCgcguuCGUGUUg -3' miRNA: 3'- aGUGGCGC--------UGCGUGGUa-CGG-----GCACAG- -5' |
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22896 | 3' | -58.5 | NC_005137.2 | + | 63488 | 0.77 | 0.208337 |
Target: 5'- aCACCG-GACGUGCUcgGCCaCGUGUCg -3' miRNA: 3'- aGUGGCgCUGCGUGGuaCGG-GCACAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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