Results 1 - 20 of 42 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22896 | 3' | -58.5 | NC_005137.2 | + | 63488 | 0.77 | 0.208337 |
Target: 5'- aCACCG-GACGUGCUcgGCCaCGUGUCg -3' miRNA: 3'- aGUGGCgCUGCGUGGuaCGG-GCACAG- -5' |
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22896 | 3' | -58.5 | NC_005137.2 | + | 35835 | 0.67 | 0.742401 |
Target: 5'- gUCACCGCG-UGCcuauuacaaacuuuACCGUGCCCucGUUg -3' miRNA: 3'- -AGUGGCGCuGCG--------------UGGUACGGGcaCAG- -5' |
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22896 | 3' | -58.5 | NC_005137.2 | + | 107921 | 0.67 | 0.744328 |
Target: 5'- cUUACCGCGgaacaACGCGCCGUGUaCGccaaguacaaauuUGUCa -3' miRNA: 3'- -AGUGGCGC-----UGCGUGGUACGgGC-------------ACAG- -5' |
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22896 | 3' | -58.5 | NC_005137.2 | + | 110597 | 0.67 | 0.745291 |
Target: 5'- cCugUGCGACG-ACCAguuggUGUCCGUGg- -3' miRNA: 3'- aGugGCGCUGCgUGGU-----ACGGGCACag -5' |
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22896 | 3' | -58.5 | NC_005137.2 | + | 112020 | 0.67 | 0.745291 |
Target: 5'- gUACCGUGACGCGCU--GCgaCGUGcUCa -3' miRNA: 3'- aGUGGCGCUGCGUGGuaCGg-GCAC-AG- -5' |
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22896 | 3' | -58.5 | NC_005137.2 | + | 95185 | 0.66 | 0.754859 |
Target: 5'- aCGCCGUGcacuACGCACgCAgauUGCaacgCGUGUCg -3' miRNA: 3'- aGUGGCGC----UGCGUG-GU---ACGg---GCACAG- -5' |
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22896 | 3' | -58.5 | NC_005137.2 | + | 96422 | 0.66 | 0.76432 |
Target: 5'- gCGCgGCGACGCGCCc-GCCgCGUugcGUUu -3' miRNA: 3'- aGUGgCGCUGCGUGGuaCGG-GCA---CAG- -5' |
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22896 | 3' | -58.5 | NC_005137.2 | + | 78231 | 0.66 | 0.791073 |
Target: 5'- gUACauUGACGCgcaugauagcaaaACCGauUGCCCGUGUCu -3' miRNA: 3'- aGUGgcGCUGCG-------------UGGU--ACGGGCACAG- -5' |
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22896 | 3' | -58.5 | NC_005137.2 | + | 96474 | 0.66 | 0.791975 |
Target: 5'- -gACCGCGaACGCaacACgGUGCgcgUCGUGUCc -3' miRNA: 3'- agUGGCGC-UGCG---UGgUACG---GGCACAG- -5' |
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22896 | 3' | -58.5 | NC_005137.2 | + | 93903 | 0.67 | 0.735625 |
Target: 5'- -aGgCGCGuAUGcCGCCAUGUuugCCGUGUCa -3' miRNA: 3'- agUgGCGC-UGC-GUGGUACG---GGCACAG- -5' |
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22896 | 3' | -58.5 | NC_005137.2 | + | 88508 | 0.67 | 0.706132 |
Target: 5'- gUCGCCGCGcagcaaGCGCCGUGUgCGUu-- -3' miRNA: 3'- -AGUGGCGCug----CGUGGUACGgGCAcag -5' |
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22896 | 3' | -58.5 | NC_005137.2 | + | 44918 | 0.73 | 0.380566 |
Target: 5'- cUCGUCGCGGCGUACCAUGaCgCCGUGc- -3' miRNA: 3'- -AGUGGCGCUGCGUGGUAC-G-GGCACag -5' |
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22896 | 3' | -58.5 | NC_005137.2 | + | 21224 | 0.72 | 0.422966 |
Target: 5'- uUUACguggGCGACGCugCggGCCgCGUGUCa -3' miRNA: 3'- -AGUGg---CGCUGCGugGuaCGG-GCACAG- -5' |
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22896 | 3' | -58.5 | NC_005137.2 | + | 34674 | 0.72 | 0.431781 |
Target: 5'- cCACCGCaccagcaaGCGCCGUGggguCCCGUGUCc -3' miRNA: 3'- aGUGGCGcug-----CGUGGUAC----GGGCACAG- -5' |
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22896 | 3' | -58.5 | NC_005137.2 | + | 110644 | 0.69 | 0.574839 |
Target: 5'- gCGCCGaCGGCGUuugGCuUGUGCCCGUGa- -3' miRNA: 3'- aGUGGC-GCUGCG---UG-GUACGGGCACag -5' |
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22896 | 3' | -58.5 | NC_005137.2 | + | 61098 | 0.69 | 0.594992 |
Target: 5'- gCGCCGCGuaaaaaacGCGCACCAacGCCgcguuCGUGUUg -3' miRNA: 3'- aGUGGCGC--------UGCGUGGUa-CGG-----GCACAG- -5' |
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22896 | 3' | -58.5 | NC_005137.2 | + | 63636 | 0.69 | 0.625404 |
Target: 5'- cCGCCGCGgcgacggucGCGCAUCGcgucgcGCCCGcgGUCa -3' miRNA: 3'- aGUGGCGC---------UGCGUGGUa-----CGGGCa-CAG- -5' |
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22896 | 3' | -58.5 | NC_005137.2 | + | 63971 | 0.68 | 0.676084 |
Target: 5'- aCGCCGCGAUGgGCCAaUGUCgG-GUUa -3' miRNA: 3'- aGUGGCGCUGCgUGGU-ACGGgCaCAG- -5' |
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22896 | 3' | -58.5 | NC_005137.2 | + | 122278 | 0.67 | 0.695166 |
Target: 5'- -aACCGCGuACGUaauagcuGCC--GCCCGUGUUg -3' miRNA: 3'- agUGGCGC-UGCG-------UGGuaCGGGCACAG- -5' |
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22896 | 3' | -58.5 | NC_005137.2 | + | 35118 | 1.1 | 0.001196 |
Target: 5'- gUCACCGCGACGCACCAUGCCCGUGUCg -3' miRNA: 3'- -AGUGGCGCUGCGUGGUACGGGCACAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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