miRNA display CGI


Results 21 - 40 of 77 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22905 5' -53.3 NC_005137.2 + 31039 0.74 0.621279
Target:  5'- gGCG-CACGaAGAGGCGCGCGGcCGCGg -3'
miRNA:   3'- -CGUgGUGCaUUUUCGUGUGCCcGCGC- -5'
22905 5' -53.3 NC_005137.2 + 32989 0.69 0.861949
Target:  5'- aGCGCCcgACGUGcacgcuGGcCACuugGCGGGCGCa -3'
miRNA:   3'- -CGUGG--UGCAUuu----UC-GUG---UGCCCGCGc -5'
22905 5' -53.3 NC_005137.2 + 34070 0.72 0.694371
Target:  5'- aGCGCaAUGUucauGCACacGCGGGCGCGa -3'
miRNA:   3'- -CGUGgUGCAuuuuCGUG--UGCCCGCGC- -5'
22905 5' -53.3 NC_005137.2 + 34573 0.67 0.943208
Target:  5'- --cCCGCGcAAAcGCAacgcgGCGGGCGCGu -3'
miRNA:   3'- cguGGUGCaUUUuCGUg----UGCCCGCGC- -5'
22905 5' -53.3 NC_005137.2 + 34863 0.73 0.685055
Target:  5'- cGCACgGCGggcaacgcgauGCGCAUGGGCGUa -3'
miRNA:   3'- -CGUGgUGCauuuu------CGUGUGCCCGCGc -5'
22905 5' -53.3 NC_005137.2 + 35036 0.66 0.947728
Target:  5'- -gACCACGUAGAuguGCGCGCGuacGGCu-- -3'
miRNA:   3'- cgUGGUGCAUUUu--CGUGUGC---CCGcgc -5'
22905 5' -53.3 NC_005137.2 + 35407 0.66 0.963401
Target:  5'- aGCACguCGCGcac-AGUGCGCGGGCgGCa -3'
miRNA:   3'- -CGUG--GUGCauuuUCGUGUGCCCG-CGc -5'
22905 5' -53.3 NC_005137.2 + 36000 0.68 0.910849
Target:  5'- aGCGuuCCGCGUuaacacggacgAAAuuuauGUgaACACGGGCGCGg -3'
miRNA:   3'- -CGU--GGUGCA-----------UUUu----CG--UGUGCCCGCGC- -5'
22905 5' -53.3 NC_005137.2 + 37454 0.66 0.946398
Target:  5'- cGCACCACGUAuuuGCGCucgaucCGgucaaaguuggacuGGCGUGa -3'
miRNA:   3'- -CGUGGUGCAUuuuCGUGu-----GC--------------CCGCGC- -5'
22905 5' -53.3 NC_005137.2 + 38090 0.74 0.621279
Target:  5'- cCGCCACGgacAAGCcCACGGGCaacGCGg -3'
miRNA:   3'- cGUGGUGCauuUUCGuGUGCCCG---CGC- -5'
22905 5' -53.3 NC_005137.2 + 39271 0.7 0.837624
Target:  5'- uUACCACGUAAucGCugGCGuacacgucGCGCGc -3'
miRNA:   3'- cGUGGUGCAUUuuCGugUGCc-------CGCGC- -5'
22905 5' -53.3 NC_005137.2 + 41825 0.7 0.820414
Target:  5'- cGCGCCACGcguuUGuuAGCGCugGugaGGUGCa -3'
miRNA:   3'- -CGUGGUGC----AUuuUCGUGugC---CCGCGc -5'
22905 5' -53.3 NC_005137.2 + 43929 0.71 0.753032
Target:  5'- uGCACgGCGUucaugccuucGGCAauuucaACGGGCGCGu -3'
miRNA:   3'- -CGUGgUGCAuuu-------UCGUg-----UGCCCGCGC- -5'
22905 5' -53.3 NC_005137.2 + 46664 0.66 0.963745
Target:  5'- aGCGCCGCuuuaaucGAAAGCACGCGccaguaugcucgcacGCGCGc -3'
miRNA:   3'- -CGUGGUGca-----UUUUCGUGUGCc--------------CGCGC- -5'
22905 5' -53.3 NC_005137.2 + 49049 0.78 0.413516
Target:  5'- gGCACCGacagguagcCGUGcGAGCGCacuGCGGGCGCa -3'
miRNA:   3'- -CGUGGU---------GCAUuUUCGUG---UGCCCGCGc -5'
22905 5' -53.3 NC_005137.2 + 57648 0.7 0.829113
Target:  5'- uGCACaaguuugACGaUGAAAcGCACACGGGCGa- -3'
miRNA:   3'- -CGUGg------UGC-AUUUU-CGUGUGCCCGCgc -5'
22905 5' -53.3 NC_005137.2 + 58704 0.66 0.946843
Target:  5'- gGCGCCGCGUuggcgucaauuAGGCACACGuGCa-- -3'
miRNA:   3'- -CGUGGUGCAuu---------UUCGUGUGCcCGcgc -5'
22905 5' -53.3 NC_005137.2 + 60002 0.67 0.928156
Target:  5'- gGCGCCGCGaauuAGGC-CGCGGucGUGCa -3'
miRNA:   3'- -CGUGGUGCauu-UUCGuGUGCC--CGCGc -5'
22905 5' -53.3 NC_005137.2 + 60975 0.68 0.916278
Target:  5'- cGCACCACGUAcgcGGUGCcgugggauugccgGCGGGUGa- -3'
miRNA:   3'- -CGUGGUGCAUuu-UCGUG-------------UGCCCGCgc -5'
22905 5' -53.3 NC_005137.2 + 61097 0.69 0.845939
Target:  5'- uGCGCCGCGUAAAAaacGCGCACcaacGcCGCGu -3'
miRNA:   3'- -CGUGGUGCAUUUU---CGUGUGcc--C-GCGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.