miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22905 5' -53.3 NC_005137.2 + 612 0.66 0.963401
Target:  5'- uCACCGCGaagguccGAAGGCGguucCACGGGuUGCGc -3'
miRNA:   3'- cGUGGUGCa------UUUUCGU----GUGCCC-GCGC- -5'
22905 5' -53.3 NC_005137.2 + 947 0.68 0.904582
Target:  5'- aGCGCC-CGUcaucGGCGCAauaaGGCGCGg -3'
miRNA:   3'- -CGUGGuGCAuuu-UCGUGUgc--CCGCGC- -5'
22905 5' -53.3 NC_005137.2 + 1995 0.66 0.955251
Target:  5'- -uGCCGCGUGcacagcucguGCACGCuGcGGCGCa -3'
miRNA:   3'- cgUGGUGCAUuuu-------CGUGUG-C-CCGCGc -5'
22905 5' -53.3 NC_005137.2 + 2041 0.66 0.952418
Target:  5'- cGCGCCuuauuugcucacgguCGUAGucGUGauuugaaacgauCACGGGCGCGu -3'
miRNA:   3'- -CGUGGu--------------GCAUUuuCGU------------GUGCCCGCGC- -5'
22905 5' -53.3 NC_005137.2 + 3462 0.66 0.963401
Target:  5'- aGUAUUAgGUGAuucaAGGUcaucagGCAUGGGCGCGc -3'
miRNA:   3'- -CGUGGUgCAUU----UUCG------UGUGCCCGCGC- -5'
22905 5' -53.3 NC_005137.2 + 5250 0.66 0.96674
Target:  5'- cGCGCCGCucGAAA-CGCGCGG-CGCa -3'
miRNA:   3'- -CGUGGUGcaUUUUcGUGUGCCcGCGc -5'
22905 5' -53.3 NC_005137.2 + 6986 0.66 0.959836
Target:  5'- uGCGCaCACGgacGAGcggucgccgGGCACaACGuGGCGCa -3'
miRNA:   3'- -CGUG-GUGCa--UUU---------UCGUG-UGC-CCGCGc -5'
22905 5' -53.3 NC_005137.2 + 7875 0.69 0.85405
Target:  5'- cGUGCCgucACGUAGGAaaacguGCACACcGGCGCa -3'
miRNA:   3'- -CGUGG---UGCAUUUU------CGUGUGcCCGCGc -5'
22905 5' -53.3 NC_005137.2 + 8500 0.66 0.956038
Target:  5'- cUugCACGUGAaaAAGaCGCGCGGcGaCGCa -3'
miRNA:   3'- cGugGUGCAUU--UUC-GUGUGCC-C-GCGc -5'
22905 5' -53.3 NC_005137.2 + 10964 0.7 0.829113
Target:  5'- gGCACUucggucGCGUGAAuAGCGCGCGacuuGGCGUa -3'
miRNA:   3'- -CGUGG------UGCAUUU-UCGUGUGC----CCGCGc -5'
22905 5' -53.3 NC_005137.2 + 12848 0.69 0.85405
Target:  5'- -gGCCAggcCGUAGcccGGCGCaaucuggaucACGGGCGCGg -3'
miRNA:   3'- cgUGGU---GCAUUu--UCGUG----------UGCCCGCGC- -5'
22905 5' -53.3 NC_005137.2 + 18282 0.74 0.621279
Target:  5'- cGCACCG---AAGAGCACACuaucauGGGCGUGg -3'
miRNA:   3'- -CGUGGUgcaUUUUCGUGUG------CCCGCGC- -5'
22905 5' -53.3 NC_005137.2 + 20403 0.67 0.933936
Target:  5'- uCACCACGgacaccaacuggucGucGCACAggaUGGGCGCGc -3'
miRNA:   3'- cGUGGUGCau------------UuuCGUGU---GCCCGCGC- -5'
22905 5' -53.3 NC_005137.2 + 20602 0.69 0.845939
Target:  5'- aCGCgUACGUGGAacauuuuaacAGCgACAUGGGCGUGg -3'
miRNA:   3'- cGUG-GUGCAUUU----------UCG-UGUGCCCGCGC- -5'
22905 5' -53.3 NC_005137.2 + 21149 0.68 0.891314
Target:  5'- uGUACCGCa-AAccGCACGCGGGCauGUGg -3'
miRNA:   3'- -CGUGGUGcaUUuuCGUGUGCCCG--CGC- -5'
22905 5' -53.3 NC_005137.2 + 22419 1.11 0.003529
Target:  5'- cGCACCACGUAAAAGCACACGGGCGCGc -3'
miRNA:   3'- -CGUGGUGCAUUUUCGUGUGCCCGCGC- -5'
22905 5' -53.3 NC_005137.2 + 22825 0.66 0.959836
Target:  5'- cUugCGCGUugccAAAcGCGaggGCGGGCGCGc -3'
miRNA:   3'- cGugGUGCA----UUUuCGUg--UGCCCGCGC- -5'
22905 5' -53.3 NC_005137.2 + 25160 0.67 0.922072
Target:  5'- aCGCCucCGUGucuGGAGCACGCGGagguucugccgaaGCGUGg -3'
miRNA:   3'- cGUGGu-GCAU---UUUCGUGUGCC-------------CGCGC- -5'
22905 5' -53.3 NC_005137.2 + 27859 0.66 0.952004
Target:  5'- aUACCACGaAAuAGCAUuGCGGGUugGCGa -3'
miRNA:   3'- cGUGGUGCaUUuUCGUG-UGCCCG--CGC- -5'
22905 5' -53.3 NC_005137.2 + 30941 0.66 0.947287
Target:  5'- cGCGCCGCGgcacAAAGCaugcugaACGCGccGCGCGc -3'
miRNA:   3'- -CGUGGUGCau--UUUCG-------UGUGCc-CGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.