miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22905 5' -53.3 NC_005137.2 + 22419 1.11 0.003529
Target:  5'- cGCACCACGUAAAAGCACACGGGCGCGc -3'
miRNA:   3'- -CGUGGUGCAUUUUCGUGUGCCCGCGC- -5'
22905 5' -53.3 NC_005137.2 + 49049 0.78 0.413516
Target:  5'- gGCACCGacagguagcCGUGcGAGCGCacuGCGGGCGCa -3'
miRNA:   3'- -CGUGGU---------GCAUuUUCGUG---UGCCCGCGc -5'
22905 5' -53.3 NC_005137.2 + 112858 0.77 0.435262
Target:  5'- cGCAUCGCugcggcucgguccaaGUGAuAGCACGCGGGCuGCGc -3'
miRNA:   3'- -CGUGGUG---------------CAUUuUCGUGUGCCCG-CGC- -5'
22905 5' -53.3 NC_005137.2 + 123916 0.75 0.548562
Target:  5'- uGCACCAaCGUAAAuuacguGCACACGaGCGUGc -3'
miRNA:   3'- -CGUGGU-GCAUUUu-----CGUGUGCcCGCGC- -5'
22905 5' -53.3 NC_005137.2 + 84320 0.75 0.548562
Target:  5'- uGCG-CGCGUGcGAGCAUACuGGCGCGu -3'
miRNA:   3'- -CGUgGUGCAUuUUCGUGUGcCCGCGC- -5'
22905 5' -53.3 NC_005137.2 + 98044 0.75 0.579506
Target:  5'- aGCGCCGgGUGGcAGCACAUuuGGCGCa -3'
miRNA:   3'- -CGUGGUgCAUUuUCGUGUGc-CCGCGc -5'
22905 5' -53.3 NC_005137.2 + 100254 0.74 0.600343
Target:  5'- gGCGCCGCaa-----CGCACGGGCGCGc -3'
miRNA:   3'- -CGUGGUGcauuuucGUGUGCCCGCGC- -5'
22905 5' -53.3 NC_005137.2 + 38090 0.74 0.621279
Target:  5'- cCGCCACGgacAAGCcCACGGGCaacGCGg -3'
miRNA:   3'- cGUGGUGCauuUUCGuGUGCCCG---CGC- -5'
22905 5' -53.3 NC_005137.2 + 31039 0.74 0.621279
Target:  5'- gGCG-CACGaAGAGGCGCGCGGcCGCGg -3'
miRNA:   3'- -CGUgGUGCaUUUUCGUGUGCCcGCGC- -5'
22905 5' -53.3 NC_005137.2 + 18282 0.74 0.621279
Target:  5'- cGCACCG---AAGAGCACACuaucauGGGCGUGg -3'
miRNA:   3'- -CGUGGUgcaUUUUCGUGUG------CCCGCGC- -5'
22905 5' -53.3 NC_005137.2 + 117576 0.73 0.64225
Target:  5'- uGCGCCGcCGgugcGGCugACGGGCGaCGu -3'
miRNA:   3'- -CGUGGU-GCauuuUCGugUGCCCGC-GC- -5'
22905 5' -53.3 NC_005137.2 + 89416 0.73 0.652727
Target:  5'- gGCACCAauuucaccGAGGCACACGGGUucaacGCGa -3'
miRNA:   3'- -CGUGGUgcau----UUUCGUGUGCCCG-----CGC- -5'
22905 5' -53.3 NC_005137.2 + 67683 0.73 0.662141
Target:  5'- aGCACCACGUcugacauuguaguGAGGGCGCGCGuuGUGCc -3'
miRNA:   3'- -CGUGGUGCA-------------UUUUCGUGUGCc-CGCGc -5'
22905 5' -53.3 NC_005137.2 + 100149 0.73 0.67362
Target:  5'- cGC-CCACGUAcgGGCGCGCcGGGuCGUc -3'
miRNA:   3'- -CGuGGUGCAUuuUCGUGUG-CCC-GCGc -5'
22905 5' -53.3 NC_005137.2 + 34863 0.73 0.685055
Target:  5'- cGCACgGCGggcaacgcgauGCGCAUGGGCGUa -3'
miRNA:   3'- -CGUGgUGCauuuu------CGUGUGCCCGCGc -5'
22905 5' -53.3 NC_005137.2 + 34070 0.72 0.694371
Target:  5'- aGCGCaAUGUucauGCACacGCGGGCGCGa -3'
miRNA:   3'- -CGUGgUGCAuuuuCGUG--UGCCCGCGC- -5'
22905 5' -53.3 NC_005137.2 + 101150 0.72 0.735139
Target:  5'- aGCGCgGCGUugAGAAGCGCGCGacccuuuuuuaGCGCGg -3'
miRNA:   3'- -CGUGgUGCA--UUUUCGUGUGCc----------CGCGC- -5'
22905 5' -53.3 NC_005137.2 + 128522 0.72 0.736141
Target:  5'- aGCACCAUGccgcacgcggcgcaUAAAuAGCGCGCgauagaguggucgucGGGCGCGg -3'
miRNA:   3'- -CGUGGUGC--------------AUUU-UCGUGUG---------------CCCGCGC- -5'
22905 5' -53.3 NC_005137.2 + 43929 0.71 0.753032
Target:  5'- uGCACgGCGUucaugccuucGGCAauuucaACGGGCGCGu -3'
miRNA:   3'- -CGUGgUGCAuuu-------UCGUg-----UGCCCGCGC- -5'
22905 5' -53.3 NC_005137.2 + 67382 0.7 0.811535
Target:  5'- gGCACCAUGuUGAuuGCAUcgGCGGGuUGCa -3'
miRNA:   3'- -CGUGGUGC-AUUuuCGUG--UGCCC-GCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.