miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22905 5' -53.3 NC_005137.2 + 100055 0.68 0.904582
Target:  5'- cGCGgCGCGUuc-AGCAUgcuuugugccGCGGcGCGCGg -3'
miRNA:   3'- -CGUgGUGCAuuuUCGUG----------UGCC-CGCGC- -5'
22905 5' -53.3 NC_005137.2 + 108468 0.7 0.837624
Target:  5'- aGUACCGCGUcAAA-CACACGG-CGCu -3'
miRNA:   3'- -CGUGGUGCAuUUUcGUGUGCCcGCGc -5'
22905 5' -53.3 NC_005137.2 + 20602 0.69 0.845939
Target:  5'- aCGCgUACGUGGAacauuuuaacAGCgACAUGGGCGUGg -3'
miRNA:   3'- cGUG-GUGCAUUU----------UCG-UGUGCCCGCGC- -5'
22905 5' -53.3 NC_005137.2 + 61097 0.69 0.845939
Target:  5'- uGCGCCGCGUAAAAaacGCGCACcaacGcCGCGu -3'
miRNA:   3'- -CGUGGUGCAUUUU---CGUGUGcc--C-GCGC- -5'
22905 5' -53.3 NC_005137.2 + 12848 0.69 0.85405
Target:  5'- -gGCCAggcCGUAGcccGGCGCaaucuggaucACGGGCGCGg -3'
miRNA:   3'- cgUGGU---GCAUUu--UCGUG----------UGCCCGCGC- -5'
22905 5' -53.3 NC_005137.2 + 75977 0.69 0.861949
Target:  5'- cGCGCgUugGUGcacGGCGCACGGGC-Ca -3'
miRNA:   3'- -CGUG-GugCAUuu-UCGUGUGCCCGcGc -5'
22905 5' -53.3 NC_005137.2 + 21149 0.68 0.891314
Target:  5'- uGUACCGCa-AAccGCACGCGGGCauGUGg -3'
miRNA:   3'- -CGUGGUGcaUUuuCGUGUGCCCG--CGC- -5'
22905 5' -53.3 NC_005137.2 + 947 0.68 0.904582
Target:  5'- aGCGCC-CGUcaucGGCGCAauaaGGCGCGg -3'
miRNA:   3'- -CGUGGuGCAuuu-UCGUGUgc--CCGCGC- -5'
22905 5' -53.3 NC_005137.2 + 64134 0.68 0.904582
Target:  5'- cGUGCUuaugacguGCGUGGAAGCGCACccguGCGCGu -3'
miRNA:   3'- -CGUGG--------UGCAUUUUCGUGUGcc--CGCGC- -5'
22905 5' -53.3 NC_005137.2 + 39271 0.7 0.837624
Target:  5'- uUACCACGUAAucGCugGCGuacacgucGCGCGc -3'
miRNA:   3'- cGUGGUGCAUUuuCGugUGCc-------CGCGC- -5'
22905 5' -53.3 NC_005137.2 + 97393 0.7 0.83254
Target:  5'- -uGCCGCGcAAAuaaguuugcagguugGGCACGuacacCGGGCGCGg -3'
miRNA:   3'- cgUGGUGCaUUU---------------UCGUGU-----GCCCGCGC- -5'
22905 5' -53.3 NC_005137.2 + 97964 0.7 0.829113
Target:  5'- cGUuCCGCGUcauuguAGGCAaaACGGGCGCGc -3'
miRNA:   3'- -CGuGGUGCAuu----UUCGUg-UGCCCGCGC- -5'
22905 5' -53.3 NC_005137.2 + 112858 0.77 0.435262
Target:  5'- cGCAUCGCugcggcucgguccaaGUGAuAGCACGCGGGCuGCGc -3'
miRNA:   3'- -CGUGGUG---------------CAUUuUCGUGUGCCCG-CGC- -5'
22905 5' -53.3 NC_005137.2 + 100254 0.74 0.600343
Target:  5'- gGCGCCGCaa-----CGCACGGGCGCGc -3'
miRNA:   3'- -CGUGGUGcauuuucGUGUGCCCGCGC- -5'
22905 5' -53.3 NC_005137.2 + 38090 0.74 0.621279
Target:  5'- cCGCCACGgacAAGCcCACGGGCaacGCGg -3'
miRNA:   3'- cGUGGUGCauuUUCGuGUGCCCG---CGC- -5'
22905 5' -53.3 NC_005137.2 + 117576 0.73 0.64225
Target:  5'- uGCGCCGcCGgugcGGCugACGGGCGaCGu -3'
miRNA:   3'- -CGUGGU-GCauuuUCGugUGCCCGC-GC- -5'
22905 5' -53.3 NC_005137.2 + 100149 0.73 0.67362
Target:  5'- cGC-CCACGUAcgGGCGCGCcGGGuCGUc -3'
miRNA:   3'- -CGuGGUGCAUuuUCGUGUG-CCC-GCGc -5'
22905 5' -53.3 NC_005137.2 + 34863 0.73 0.685055
Target:  5'- cGCACgGCGggcaacgcgauGCGCAUGGGCGUa -3'
miRNA:   3'- -CGUGgUGCauuuu------CGUGUGCCCGCGc -5'
22905 5' -53.3 NC_005137.2 + 67382 0.7 0.811535
Target:  5'- gGCACCAUGuUGAuuGCAUcgGCGGGuUGCa -3'
miRNA:   3'- -CGUGGUGC-AUUuuCGUG--UGCCC-GCGc -5'
22905 5' -53.3 NC_005137.2 + 41825 0.7 0.820414
Target:  5'- cGCGCCACGcguuUGuuAGCGCugGugaGGUGCa -3'
miRNA:   3'- -CGUGGUGC----AUuuUCGUGugC---CCGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.