miRNA display CGI


Results 1 - 20 of 33 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22909 3' -55.7 NC_005137.2 + 119951 0.66 0.8855
Target:  5'- -gGAUUugACGGUaacGCuCGU-GCCCAUUa -3'
miRNA:   3'- aaCUAAugUGCCG---CG-GCAgCGGGUAG- -5'
22909 3' -55.7 NC_005137.2 + 88339 0.66 0.8855
Target:  5'- -cGAUUGCGCgcuuGGCGUCG-CGCCaaaguaGUCc -3'
miRNA:   3'- aaCUAAUGUG----CCGCGGCaGCGGg-----UAG- -5'
22909 3' -55.7 NC_005137.2 + 109458 0.66 0.8855
Target:  5'- -----aACGCGGCGUuuCGUCGaCCCAc- -3'
miRNA:   3'- aacuaaUGUGCCGCG--GCAGC-GGGUag -5'
22909 3' -55.7 NC_005137.2 + 15746 0.66 0.877584
Target:  5'- -aGGU--CGCGGCGCCagcGUCGCCauguguuCGUCg -3'
miRNA:   3'- aaCUAauGUGCCGCGG---CAGCGG-------GUAG- -5'
22909 3' -55.7 NC_005137.2 + 6055 0.66 0.863261
Target:  5'- -----cAC-CGGCGCCG-CGUUCAUCg -3'
miRNA:   3'- aacuaaUGuGCCGCGGCaGCGGGUAG- -5'
22909 3' -55.7 NC_005137.2 + 118481 0.66 0.847333
Target:  5'- aUGAUggcgugcuCAUGuGCGCCGUagaccgacCGUCCAUCg -3'
miRNA:   3'- aACUAau------GUGC-CGCGGCA--------GCGGGUAG- -5'
22909 3' -55.7 NC_005137.2 + 65414 0.67 0.839058
Target:  5'- -----aACACGGagcggcacccaaUGCCGUUGCCCGUg -3'
miRNA:   3'- aacuaaUGUGCC------------GCGGCAGCGGGUAg -5'
22909 3' -55.7 NC_005137.2 + 5376 0.67 0.839058
Target:  5'- -cGGUUACGCGuuaaCGCaCGUCGCCaauGUCu -3'
miRNA:   3'- aaCUAAUGUGCc---GCG-GCAGCGGg--UAG- -5'
22909 3' -55.7 NC_005137.2 + 85319 0.67 0.83822
Target:  5'- ---uUUACAagagcauccgcguUGGCGCCGcCGCCCAc- -3'
miRNA:   3'- aacuAAUGU-------------GCCGCGGCaGCGGGUag -5'
22909 3' -55.7 NC_005137.2 + 108545 0.67 0.833998
Target:  5'- gUGA--GCGCGGUGCagccgacggagcgcaCGUUGCCCAaaUCg -3'
miRNA:   3'- aACUaaUGUGCCGCG---------------GCAGCGGGU--AG- -5'
22909 3' -55.7 NC_005137.2 + 99336 0.67 0.830587
Target:  5'- -----cACGCGGCGgUGUCGUCCGc- -3'
miRNA:   3'- aacuaaUGUGCCGCgGCAGCGGGUag -5'
22909 3' -55.7 NC_005137.2 + 77198 0.67 0.8228
Target:  5'- cUUGAUUACuauuuugggugauuuCGGCaacUCGUCGCCCGUUu -3'
miRNA:   3'- -AACUAAUGu--------------GCCGc--GGCAGCGGGUAG- -5'
22909 3' -55.7 NC_005137.2 + 31179 0.67 0.821926
Target:  5'- gUUGuaaUAUACGGCGCaaccggcccgCGUCGCCCu-- -3'
miRNA:   3'- -AACua-AUGUGCCGCG----------GCAGCGGGuag -5'
22909 3' -55.7 NC_005137.2 + 37316 0.67 0.821926
Target:  5'- -cGAUUGCGaucCGGCGCUGg-GCCUGUUg -3'
miRNA:   3'- aaCUAAUGU---GCCGCGGCagCGGGUAG- -5'
22909 3' -55.7 NC_005137.2 + 103534 0.67 0.821926
Target:  5'- aUUGAcug-GCGGCGCaCGUCGCgaCGUCa -3'
miRNA:   3'- -AACUaaugUGCCGCG-GCAGCGg-GUAG- -5'
22909 3' -55.7 NC_005137.2 + 75016 0.67 0.813084
Target:  5'- -cGA--GCGgGGUGCCGUCGgCCAc- -3'
miRNA:   3'- aaCUaaUGUgCCGCGGCAGCgGGUag -5'
22909 3' -55.7 NC_005137.2 + 1509 0.67 0.810397
Target:  5'- -----cGCGCGGCGCCGacgcguuguucaauUCGgCCAUUa -3'
miRNA:   3'- aacuaaUGUGCCGCGGC--------------AGCgGGUAG- -5'
22909 3' -55.7 NC_005137.2 + 63284 0.67 0.80407
Target:  5'- -----aACACGGUcucGCCGUCGCUCGc- -3'
miRNA:   3'- aacuaaUGUGCCG---CGGCAGCGGGUag -5'
22909 3' -55.7 NC_005137.2 + 109455 0.67 0.80407
Target:  5'- -cGggUACAgGGUGCCGUUGacaacgCCGUCu -3'
miRNA:   3'- aaCuaAUGUgCCGCGGCAGCg-----GGUAG- -5'
22909 3' -55.7 NC_005137.2 + 12375 0.68 0.794893
Target:  5'- -----aGCACGGUGCgGUUGUCCAg- -3'
miRNA:   3'- aacuaaUGUGCCGCGgCAGCGGGUag -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.