miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22909 3' -55.7 NC_005137.2 + 85319 0.67 0.83822
Target:  5'- ---uUUACAagagcauccgcguUGGCGCCGcCGCCCAc- -3'
miRNA:   3'- aacuAAUGU-------------GCCGCGGCaGCGGGUag -5'
22909 3' -55.7 NC_005137.2 + 88339 0.66 0.8855
Target:  5'- -cGAUUGCGCgcuuGGCGUCG-CGCCaaaguaGUCc -3'
miRNA:   3'- aaCUAAUGUG----CCGCGGCaGCGGg-----UAG- -5'
22909 3' -55.7 NC_005137.2 + 96002 0.7 0.685909
Target:  5'- aUUGAaucgGCAUGcagGCCGUUGCCCGUCg -3'
miRNA:   3'- -AACUaa--UGUGCcg-CGGCAGCGGGUAG- -5'
22909 3' -55.7 NC_005137.2 + 97988 0.68 0.785561
Target:  5'- -cGGgcGCGCGGCGUgGgugCGCCCGc- -3'
miRNA:   3'- aaCUaaUGUGCCGCGgCa--GCGGGUag -5'
22909 3' -55.7 NC_005137.2 + 99336 0.67 0.830587
Target:  5'- -----cACGCGGCGgUGUCGUCCGc- -3'
miRNA:   3'- aacuaaUGUGCCGCgGCAGCGGGUag -5'
22909 3' -55.7 NC_005137.2 + 103534 0.67 0.821926
Target:  5'- aUUGAcug-GCGGCGCaCGUCGCgaCGUCa -3'
miRNA:   3'- -AACUaaugUGCCGCG-GCAGCGg-GUAG- -5'
22909 3' -55.7 NC_005137.2 + 108545 0.67 0.833998
Target:  5'- gUGA--GCGCGGUGCagccgacggagcgcaCGUUGCCCAaaUCg -3'
miRNA:   3'- aACUaaUGUGCCGCG---------------GCAGCGGGU--AG- -5'
22909 3' -55.7 NC_005137.2 + 109455 0.67 0.80407
Target:  5'- -cGggUACAgGGUGCCGUUGacaacgCCGUCu -3'
miRNA:   3'- aaCuaAUGUgCCGCGGCAGCg-----GGUAG- -5'
22909 3' -55.7 NC_005137.2 + 109458 0.66 0.8855
Target:  5'- -----aACGCGGCGUuuCGUCGaCCCAc- -3'
miRNA:   3'- aacuaaUGUGCCGCG--GCAGC-GGGUag -5'
22909 3' -55.7 NC_005137.2 + 109591 0.73 0.500187
Target:  5'- cUUGGUUugGCggguGGCGCUGUCGuaaaaCCCGUCa -3'
miRNA:   3'- -AACUAAugUG----CCGCGGCAGC-----GGGUAG- -5'
22909 3' -55.7 NC_005137.2 + 112393 0.69 0.706525
Target:  5'- aUUGAUUGCGCGaucGCGCaCGgCGCgCCAUUg -3'
miRNA:   3'- -AACUAAUGUGC---CGCG-GCaGCG-GGUAG- -5'
22909 3' -55.7 NC_005137.2 + 118481 0.66 0.847333
Target:  5'- aUGAUggcgugcuCAUGuGCGCCGUagaccgacCGUCCAUCg -3'
miRNA:   3'- aACUAau------GUGC-CGCGGCA--------GCGGGUAG- -5'
22909 3' -55.7 NC_005137.2 + 119951 0.66 0.8855
Target:  5'- -gGAUUugACGGUaacGCuCGU-GCCCAUUa -3'
miRNA:   3'- aaCUAAugUGCCG---CG-GCAgCGGGUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.