miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22909 5' -55.3 NC_005137.2 + 122702 0.66 0.917184
Target:  5'- gUAACGGCCGuugCCAAgGUuacgCGUGCUg -3'
miRNA:   3'- gGUUGCCGGCugaGGUUgCG----GCAUGA- -5'
22909 5' -55.3 NC_005137.2 + 118173 0.67 0.87119
Target:  5'- aCGGCcuGGCCGAaaaCUuuGACGCCGUuggcGCUg -3'
miRNA:   3'- gGUUG--CCGGCU---GAggUUGCGGCA----UGA- -5'
22909 5' -55.3 NC_005137.2 + 104084 0.66 0.92821
Target:  5'- ---uUGGCCGGCUCguuguGACGCCauGUGCg -3'
miRNA:   3'- gguuGCCGGCUGAGg----UUGCGG--CAUGa -5'
22909 5' -55.3 NC_005137.2 + 103774 0.68 0.823369
Target:  5'- cCCAGCGGCCuuCUUugUAAUGCUGUugUu -3'
miRNA:   3'- -GGUUGCCGGcuGAG--GUUGCGGCAugA- -5'
22909 5' -55.3 NC_005137.2 + 103607 0.68 0.831819
Target:  5'- gCAGCGGCCGcuACUUUuggccgGACGgCGUGCg -3'
miRNA:   3'- gGUUGCCGGC--UGAGG------UUGCgGCAUGa -5'
22909 5' -55.3 NC_005137.2 + 101439 0.67 0.87119
Target:  5'- uCCAACGGCUGAUUCaauugGCCGgUugUg -3'
miRNA:   3'- -GGUUGCCGGCUGAGguug-CGGC-AugA- -5'
22909 5' -55.3 NC_005137.2 + 99958 0.67 0.863722
Target:  5'- aCAACGGCCG-CggCCGcGCGCCucuucGUGCg -3'
miRNA:   3'- gGUUGCCGGCuGa-GGU-UGCGG-----CAUGa -5'
22909 5' -55.3 NC_005137.2 + 95627 0.67 0.87119
Target:  5'- uUAACGaGUCGuuuuUUCCGcguGCGCCGUGCg -3'
miRNA:   3'- gGUUGC-CGGCu---GAGGU---UGCGGCAUGa -5'
22909 5' -55.3 NC_005137.2 + 95450 0.7 0.720778
Target:  5'- gCCGGCGGUgCGugUCUugacaAGCGCCGUGu- -3'
miRNA:   3'- -GGUUGCCG-GCugAGG-----UUGCGGCAUga -5'
22909 5' -55.3 NC_005137.2 + 95156 0.67 0.87119
Target:  5'- gCAACGcGCaCGAaugCCAccgcacauugACGCCGUGCa -3'
miRNA:   3'- gGUUGC-CG-GCUga-GGU----------UGCGGCAUGa -5'
22909 5' -55.3 NC_005137.2 + 86670 0.73 0.598662
Target:  5'- cCCAACaGCCGACUUgAACGCaCGUcGCc -3'
miRNA:   3'- -GGUUGcCGGCUGAGgUUGCG-GCA-UGa -5'
22909 5' -55.3 NC_005137.2 + 85083 0.68 0.848164
Target:  5'- cCCAAauCGGgCGAUuugCCAguaaacACGCCGUGCa -3'
miRNA:   3'- -GGUU--GCCgGCUGa--GGU------UGCGGCAUGa -5'
22909 5' -55.3 NC_005137.2 + 84208 0.68 0.856045
Target:  5'- -aAACGGCCGugUugugguaaaugUCAGCGCCGcaUACc -3'
miRNA:   3'- ggUUGCCGGCugA-----------GGUUGCGGC--AUGa -5'
22909 5' -55.3 NC_005137.2 + 79696 0.68 0.856045
Target:  5'- aCAACGGCgaCGugUuuGAUuuGCCGUACa -3'
miRNA:   3'- gGUUGCCG--GCugAggUUG--CGGCAUGa -5'
22909 5' -55.3 NC_005137.2 + 75581 0.68 0.856045
Target:  5'- --cAUGGCgGACgcgggCGGCGCCGUGCg -3'
miRNA:   3'- gguUGCCGgCUGag---GUUGCGGCAUGa -5'
22909 5' -55.3 NC_005137.2 + 74723 0.69 0.787904
Target:  5'- uCCAGCGGCacuuCGcAgUCCAugGCCGUuuuguGCg -3'
miRNA:   3'- -GGUUGCCG----GC-UgAGGUugCGGCA-----UGa -5'
22909 5' -55.3 NC_005137.2 + 74498 0.68 0.840086
Target:  5'- --uGCGGCCaACg-UAACGCCGUACa -3'
miRNA:   3'- gguUGCCGGcUGagGUUGCGGCAUGa -5'
22909 5' -55.3 NC_005137.2 + 72179 0.66 0.917184
Target:  5'- aCAACGGCCaACUuuGACGUgaaagaGUACa -3'
miRNA:   3'- gGUUGCCGGcUGAggUUGCGg-----CAUGa -5'
22909 5' -55.3 NC_005137.2 + 66819 0.68 0.823369
Target:  5'- gCCAAuguCGGCUgugauguacguGugUCCGGCGCCGUuaaACg -3'
miRNA:   3'- -GGUU---GCCGG-----------CugAGGUUGCGGCA---UGa -5'
22909 5' -55.3 NC_005137.2 + 64961 0.66 0.933363
Target:  5'- gCCAACGuGCCGACgugCCAACuuucacguuuGCCa---- -3'
miRNA:   3'- -GGUUGC-CGGCUGa--GGUUG----------CGGcauga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.