miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22911 3' -49.8 NC_005137.2 + 8463 1.15 0.004828
Target:  5'- cGCAAUUGCGACGCGCCGAUAACGUGCc -3'
miRNA:   3'- -CGUUAACGCUGCGCGGCUAUUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 123973 0.81 0.483539
Target:  5'- uGCGAUUGCGGCGacgagGCCGugacgcGCGUGCg -3'
miRNA:   3'- -CGUUAACGCUGCg----CGGCuau---UGCACG- -5'
22911 3' -49.8 NC_005137.2 + 56596 0.79 0.544686
Target:  5'- cGCGAcggGCGACGUGCuCGAUAaaaACGUGUu -3'
miRNA:   3'- -CGUUaa-CGCUGCGCG-GCUAU---UGCACG- -5'
22911 3' -49.8 NC_005137.2 + 113868 0.79 0.544686
Target:  5'- aUAGUUGCG-CGUGCUGGUGACG-GCa -3'
miRNA:   3'- cGUUAACGCuGCGCGGCUAUUGCaCG- -5'
22911 3' -49.8 NC_005137.2 + 124950 0.77 0.671176
Target:  5'- -gGGUUGCGAUgaacgcgGCGCCGGUGAUGggGCg -3'
miRNA:   3'- cgUUAACGCUG-------CGCGGCUAUUGCa-CG- -5'
22911 3' -49.8 NC_005137.2 + 82742 0.76 0.724762
Target:  5'- uGCGAagGCGAUGaCGCCGAgGAUGUGg -3'
miRNA:   3'- -CGUUaaCGCUGC-GCGGCUaUUGCACg -5'
22911 3' -49.8 NC_005137.2 + 79736 0.75 0.765273
Target:  5'- cGCaAAUUGCGACGCaaugGCCGcguUAGCGUugGCg -3'
miRNA:   3'- -CG-UUAACGCUGCG----CGGCu--AUUGCA--CG- -5'
22911 3' -49.8 NC_005137.2 + 109522 0.75 0.775103
Target:  5'- uGCAcaaGUcGCuGCGUGCCGGUAAUGUGUu -3'
miRNA:   3'- -CGU---UAaCGcUGCGCGGCUAUUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 17302 0.75 0.784794
Target:  5'- cGCAGgacauUGACGCGCUGugcGACGUGCg -3'
miRNA:   3'- -CGUUaac--GCUGCGCGGCua-UUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 112013 0.74 0.821957
Target:  5'- aGCAAacguaccGUGACGCGCUGc-GACGUGCu -3'
miRNA:   3'- -CGUUaa-----CGCUGCGCGGCuaUUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 2254 0.74 0.8308
Target:  5'- cGCGAUUGCG-CGCGuuGAUuGACGg-- -3'
miRNA:   3'- -CGUUAACGCuGCGCggCUA-UUGCacg -5'
22911 3' -49.8 NC_005137.2 + 33588 0.74 0.839445
Target:  5'- ----gUGCGcCGCGcCCGGUGuACGUGCc -3'
miRNA:   3'- cguuaACGCuGCGC-GGCUAU-UGCACG- -5'
22911 3' -49.8 NC_005137.2 + 24305 0.73 0.856109
Target:  5'- gGCGuUUGCGGCuGCGgUGGUGGCGgGCa -3'
miRNA:   3'- -CGUuAACGCUG-CGCgGCUAUUGCaCG- -5'
22911 3' -49.8 NC_005137.2 + 72338 0.73 0.856109
Target:  5'- cGCgAAUUGCGcgaGCuGCGCCGcuccGCGUGCa -3'
miRNA:   3'- -CG-UUAACGC---UG-CGCGGCuau-UGCACG- -5'
22911 3' -49.8 NC_005137.2 + 10699 0.73 0.864113
Target:  5'- --cGUUuCGugGCGuUCGAUGGCGUGCa -3'
miRNA:   3'- cguUAAcGCugCGC-GGCUAUUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 92224 0.73 0.871888
Target:  5'- aGCGAa-GUGACGCGCaucaccaaCGAcAGCGUGCg -3'
miRNA:   3'- -CGUUaaCGCUGCGCG--------GCUaUUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 108574 0.73 0.871888
Target:  5'- cGUGAUcgGCGGCGCGCCcGUgugcuuuuacGugGUGCg -3'
miRNA:   3'- -CGUUAa-CGCUGCGCGGcUA----------UugCACG- -5'
22911 3' -49.8 NC_005137.2 + 119575 0.73 0.871888
Target:  5'- -----aGCGACGCacGCUGAgcACGUGCc -3'
miRNA:   3'- cguuaaCGCUGCG--CGGCUauUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 4232 0.73 0.879427
Target:  5'- uGCAAUUGCGuCG-GUCGGcgacACGUGCa -3'
miRNA:   3'- -CGUUAACGCuGCgCGGCUau--UGCACG- -5'
22911 3' -49.8 NC_005137.2 + 81267 0.72 0.886727
Target:  5'- aGCAAacaaaCGACGCGCCGAUGAa--GCg -3'
miRNA:   3'- -CGUUaac--GCUGCGCGGCUAUUgcaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.