miRNA display CGI


Results 1 - 20 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22911 3' -49.8 NC_005137.2 + 2254 0.74 0.8308
Target:  5'- cGCGAUUGCG-CGCGuuGAUuGACGg-- -3'
miRNA:   3'- -CGUUAACGCuGCGCggCUA-UUGCacg -5'
22911 3' -49.8 NC_005137.2 + 4232 0.73 0.879427
Target:  5'- uGCAAUUGCGuCG-GUCGGcgacACGUGCa -3'
miRNA:   3'- -CGUUAACGCuGCgCGGCUau--UGCACG- -5'
22911 3' -49.8 NC_005137.2 + 4445 0.66 0.994554
Target:  5'- cGCGuc-GCGcaccuuCGCGCCGucguaauaacGUAACGUGUu -3'
miRNA:   3'- -CGUuaaCGCu-----GCGCGGC----------UAUUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 5241 0.68 0.981904
Target:  5'- -aAAUUGCcACGCGCCGcucgaAACGcGCg -3'
miRNA:   3'- cgUUAACGcUGCGCGGCua---UUGCaCG- -5'
22911 3' -49.8 NC_005137.2 + 5339 0.67 0.988971
Target:  5'- uGCAAgUGCuGAUGgGCCGGUuuaugcauuuUGUGCg -3'
miRNA:   3'- -CGUUaACG-CUGCgCGGCUAuu--------GCACG- -5'
22911 3' -49.8 NC_005137.2 + 7447 0.7 0.958374
Target:  5'- uGCAAUcGCGAgGCacGCUGuuUGugGUGCa -3'
miRNA:   3'- -CGUUAaCGCUgCG--CGGCu-AUugCACG- -5'
22911 3' -49.8 NC_005137.2 + 8247 0.68 0.98577
Target:  5'- cGCGAUUGCuaaccacuacACcCGCCGGguucacUAACGUGCu -3'
miRNA:   3'- -CGUUAACGc---------UGcGCGGCU------AUUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 8463 1.15 0.004828
Target:  5'- cGCAAUUGCGACGCGCCGAUAACGUGCc -3'
miRNA:   3'- -CGUUAACGCUGCGCGGCUAUUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 10699 0.73 0.864113
Target:  5'- --cGUUuCGugGCGuUCGAUGGCGUGCa -3'
miRNA:   3'- cguUAAcGCugCGC-GGCUAUUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 12092 0.67 0.990345
Target:  5'- cGCAAgUGCGAguUGCGCugcagaaaCGGUGACgGUGUu -3'
miRNA:   3'- -CGUUaACGCU--GCGCG--------GCUAUUG-CACG- -5'
22911 3' -49.8 NC_005137.2 + 12684 0.67 0.990345
Target:  5'- uGCAGUUugaGCaGCGCGUCGG-AACG-GCg -3'
miRNA:   3'- -CGUUAA---CGcUGCGCGGCUaUUGCaCG- -5'
22911 3' -49.8 NC_005137.2 + 13068 0.66 0.994554
Target:  5'- cGCGuUUGCGAaaCGCGCCcg-AACuUGCc -3'
miRNA:   3'- -CGUuAACGCU--GCGCGGcuaUUGcACG- -5'
22911 3' -49.8 NC_005137.2 + 15259 0.69 0.977298
Target:  5'- -----cGCGGCGCGCaCGuu-GCGUuGCa -3'
miRNA:   3'- cguuaaCGCUGCGCG-GCuauUGCA-CG- -5'
22911 3' -49.8 NC_005137.2 + 15510 0.67 0.993676
Target:  5'- gGCGGUUGUGACGUuaUaGUAcCGUGUg -3'
miRNA:   3'- -CGUUAACGCUGCGcgGcUAUuGCACG- -5'
22911 3' -49.8 NC_005137.2 + 15856 0.66 0.994554
Target:  5'- aGCAAguuaaaCGACagugcCGCCGGUcACGUGCc -3'
miRNA:   3'- -CGUUaac---GCUGc----GCGGCUAuUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 17302 0.75 0.784794
Target:  5'- cGCAGgacauUGACGCGCUGugcGACGUGCg -3'
miRNA:   3'- -CGUUaac--GCUGCGCGGCua-UUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 17470 0.7 0.962103
Target:  5'- cGCAgg-GUGugGgGCUGGUgGugGUGCa -3'
miRNA:   3'- -CGUuaaCGCugCgCGGCUA-UugCACG- -5'
22911 3' -49.8 NC_005137.2 + 18306 0.72 0.900583
Target:  5'- gGCGug-GaCGACGUGCCcgcguuUAACGUGCg -3'
miRNA:   3'- -CGUuaaC-GCUGCGCGGcu----AUUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 18562 0.69 0.96885
Target:  5'- cGCAucguGUUGCGAcCGCGCCGuuucaauuGCGagauUGCc -3'
miRNA:   3'- -CGU----UAACGCU-GCGCGGCuau-----UGC----ACG- -5'
22911 3' -49.8 NC_005137.2 + 22405 0.66 0.997138
Target:  5'- gGCAAca-UGGCGCGCC--UGACGcUGCg -3'
miRNA:   3'- -CGUUaacGCUGCGCGGcuAUUGC-ACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.