miRNA display CGI


Results 21 - 40 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22911 3' -49.8 NC_005137.2 + 24270 0.66 0.997138
Target:  5'- uGCAaaAUUGCacuguaacgaacGGCGCGCUGAcaGACG-GCu -3'
miRNA:   3'- -CGU--UAACG------------CUGCGCGGCUa-UUGCaCG- -5'
22911 3' -49.8 NC_005137.2 + 24305 0.73 0.856109
Target:  5'- gGCGuUUGCGGCuGCGgUGGUGGCGgGCa -3'
miRNA:   3'- -CGUuAACGCUG-CGCgGCUAUUGCaCG- -5'
22911 3' -49.8 NC_005137.2 + 25991 0.68 0.987449
Target:  5'- gGCGGUUGU-ACGCGCUGAUAaacAUGgGUa -3'
miRNA:   3'- -CGUUAACGcUGCGCGGCUAU---UGCaCG- -5'
22911 3' -49.8 NC_005137.2 + 26308 0.68 0.98577
Target:  5'- aCAAcgGCGGCGCGCUGGacucUAacACGcGCg -3'
miRNA:   3'- cGUUaaCGCUGCGCGGCU----AU--UGCaCG- -5'
22911 3' -49.8 NC_005137.2 + 26680 0.67 0.993676
Target:  5'- cGCAcgUGCGAacguuugaugGCGCUGA--ACGgcgGCg -3'
miRNA:   3'- -CGUuaACGCUg---------CGCGGCUauUGCa--CG- -5'
22911 3' -49.8 NC_005137.2 + 26795 0.66 0.996015
Target:  5'- cGCGc-UGCGACGCGCaCGcuuguACGaGCg -3'
miRNA:   3'- -CGUuaACGCUGCGCG-GCuau--UGCaCG- -5'
22911 3' -49.8 NC_005137.2 + 28179 0.67 0.992688
Target:  5'- cGCAAUaagGCGACaGCGUC----GCGUGUa -3'
miRNA:   3'- -CGUUAa--CGCUG-CGCGGcuauUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 30931 0.7 0.958374
Target:  5'- aGCAcgUGCG-CGCGCCGcgGcacaaaGCaUGCu -3'
miRNA:   3'- -CGUuaACGCuGCGCGGCuaU------UGcACG- -5'
22911 3' -49.8 NC_005137.2 + 30974 0.68 0.981904
Target:  5'- -----cGCGcCGCGUCGGaccGCGUGCu -3'
miRNA:   3'- cguuaaCGCuGCGCGGCUau-UGCACG- -5'
22911 3' -49.8 NC_005137.2 + 31079 0.71 0.940976
Target:  5'- uGCG--UGCG-CGuCGCCGAUGauGCGUGg -3'
miRNA:   3'- -CGUuaACGCuGC-GCGGCUAU--UGCACg -5'
22911 3' -49.8 NC_005137.2 + 31421 0.69 0.965593
Target:  5'- gGCAGcUGCacguCGaCGCCGcUAAUGUGCa -3'
miRNA:   3'- -CGUUaACGcu--GC-GCGGCuAUUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 32435 0.69 0.977298
Target:  5'- cGCAAcagUGCGugauguaccaGCGCGuuGccaaaauacAUGGCGUGCa -3'
miRNA:   3'- -CGUUa--ACGC----------UGCGCggC---------UAUUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 33048 0.67 0.991581
Target:  5'- aGCAAaUGcCGACGCGUucuaGAgauUGUGCa -3'
miRNA:   3'- -CGUUaAC-GCUGCGCGg---CUauuGCACG- -5'
22911 3' -49.8 NC_005137.2 + 33588 0.74 0.839445
Target:  5'- ----gUGCGcCGCGcCCGGUGuACGUGCc -3'
miRNA:   3'- cguuaACGCuGCGC-GGCUAU-UGCACG- -5'
22911 3' -49.8 NC_005137.2 + 34366 0.72 0.900583
Target:  5'- gGCAAUgugucaaaggUGCGucaGCGCCGAU--UGUGCu -3'
miRNA:   3'- -CGUUA----------ACGCug-CGCGGCUAuuGCACG- -5'
22911 3' -49.8 NC_005137.2 + 34591 0.72 0.900583
Target:  5'- gGCGGgcGCGucgcCGCGCgGGUAGCGgucgGCg -3'
miRNA:   3'- -CGUUaaCGCu---GCGCGgCUAUUGCa---CG- -5'
22911 3' -49.8 NC_005137.2 + 35517 0.69 0.968217
Target:  5'- aGCGAUgcgcccgUGCGGCGCGCauccgacCGGU-ACGUuGCa -3'
miRNA:   3'- -CGUUA-------ACGCUGCGCG-------GCUAuUGCA-CG- -5'
22911 3' -49.8 NC_005137.2 + 40254 0.67 0.990345
Target:  5'- uGCAuuggccgUGUGGCGCGCa---AACGUGUu -3'
miRNA:   3'- -CGUua-----ACGCUGCGCGgcuaUUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 41667 0.69 0.971882
Target:  5'- -----aGCGACGUGCCGAgcucGACGa-- -3'
miRNA:   3'- cguuaaCGCUGCGCGGCUa---UUGCacg -5'
22911 3' -49.8 NC_005137.2 + 41832 0.71 0.935987
Target:  5'- cGCGuUUGUua-GCGCUGGUGAgGUGCa -3'
miRNA:   3'- -CGUuAACGcugCGCGGCUAUUgCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.