miRNA display CGI


Results 21 - 40 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22911 3' -49.8 NC_005137.2 + 86872 0.66 0.997138
Target:  5'- -gAAUUGCGAuCGCaCCGuu-GCgGUGCg -3'
miRNA:   3'- cgUUAACGCU-GCGcGGCuauUG-CACG- -5'
22911 3' -49.8 NC_005137.2 + 84731 0.66 0.996015
Target:  5'- aGCAcgUGCccgacccgcccGaACGCGCCGA---CGUGUu -3'
miRNA:   3'- -CGUuaACG-----------C-UGCGCGGCUauuGCACG- -5'
22911 3' -49.8 NC_005137.2 + 90907 0.66 0.995331
Target:  5'- aGCAcGUUGCGcGCGUGCuCGAUcauGAUGaGCa -3'
miRNA:   3'- -CGU-UAACGC-UGCGCG-GCUA---UUGCaCG- -5'
22911 3' -49.8 NC_005137.2 + 129204 0.66 0.99595
Target:  5'- -----cGCGcACaauuuuaGCGCCGAugaaguUAACGUGCa -3'
miRNA:   3'- cguuaaCGC-UG-------CGCGGCU------AUUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 106204 0.66 0.995331
Target:  5'- cGCAcgUGgGACGCGgUCGccaagAACGgGCa -3'
miRNA:   3'- -CGUuaACgCUGCGC-GGCua---UUGCaCG- -5'
22911 3' -49.8 NC_005137.2 + 51908 0.66 0.994554
Target:  5'- aGCGGUUGCGACaCGUgGAaaauAUGUGa -3'
miRNA:   3'- -CGUUAACGCUGcGCGgCUau--UGCACg -5'
22911 3' -49.8 NC_005137.2 + 4445 0.66 0.994554
Target:  5'- cGCGuc-GCGcaccuuCGCGCCGucguaauaacGUAACGUGUu -3'
miRNA:   3'- -CGUuaaCGCu-----GCGCGGC----------UAUUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 13068 0.66 0.994554
Target:  5'- cGCGuUUGCGAaaCGCGCCcg-AACuUGCc -3'
miRNA:   3'- -CGUuAACGCU--GCGCGGcuaUUGcACG- -5'
22911 3' -49.8 NC_005137.2 + 81796 0.66 0.995331
Target:  5'- aGUuuUUGCGucGCGCGUCGcGUaucGAUGUGCc -3'
miRNA:   3'- -CGuuAACGC--UGCGCGGC-UA---UUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 70336 0.66 0.995331
Target:  5'- gGCGucgGCGAagGCGUCGGUGAagGUGUu -3'
miRNA:   3'- -CGUuaaCGCUg-CGCGGCUAUUg-CACG- -5'
22911 3' -49.8 NC_005137.2 + 123102 0.66 0.99595
Target:  5'- gGCAAaUGCGcaauggaGCuGCGCCGG---UGUGCa -3'
miRNA:   3'- -CGUUaACGC-------UG-CGCGGCUauuGCACG- -5'
22911 3' -49.8 NC_005137.2 + 110310 0.66 0.996015
Target:  5'- gGCGAUcGUGACGUGUUuGUGcGCGUGUu -3'
miRNA:   3'- -CGUUAaCGCUGCGCGGcUAU-UGCACG- -5'
22911 3' -49.8 NC_005137.2 + 110630 0.66 0.996615
Target:  5'- gGCcg-UGCacaaACGCGCCGAcGGCGUuugGCu -3'
miRNA:   3'- -CGuuaACGc---UGCGCGGCUaUUGCA---CG- -5'
22911 3' -49.8 NC_005137.2 + 119535 0.66 0.996015
Target:  5'- cGCAAUccGCuGACGUGUCGAguGCGUuuaGCc -3'
miRNA:   3'- -CGUUAa-CG-CUGCGCGGCUauUGCA---CG- -5'
22911 3' -49.8 NC_005137.2 + 103806 0.66 0.996615
Target:  5'- aGCAGUUgcuggugugcgGCGGCGgGuuGGUGcACG-GCa -3'
miRNA:   3'- -CGUUAA-----------CGCUGCgCggCUAU-UGCaCG- -5'
22911 3' -49.8 NC_005137.2 + 24270 0.66 0.997138
Target:  5'- uGCAaaAUUGCacuguaacgaacGGCGCGCUGAcaGACG-GCu -3'
miRNA:   3'- -CGU--UAACG------------CUGCGCGGCUa-UUGCaCG- -5'
22911 3' -49.8 NC_005137.2 + 108149 0.66 0.996615
Target:  5'- uCGGgcgGCGGCgGCGUCGGUAuGCGcGCg -3'
miRNA:   3'- cGUUaa-CGCUG-CGCGGCUAU-UGCaCG- -5'
22911 3' -49.8 NC_005137.2 + 64772 0.67 0.992688
Target:  5'- cGCAAUUGUauGACGUGuuGAacgcUAGCcgcgccaacauGUGCa -3'
miRNA:   3'- -CGUUAACG--CUGCGCggCU----AUUG-----------CACG- -5'
22911 3' -49.8 NC_005137.2 + 26680 0.67 0.993676
Target:  5'- cGCAcgUGCGAacguuugaugGCGCUGA--ACGgcgGCg -3'
miRNA:   3'- -CGUuaACGCUg---------CGCGGCUauUGCa--CG- -5'
22911 3' -49.8 NC_005137.2 + 33048 0.67 0.991581
Target:  5'- aGCAAaUGcCGACGCGUucuaGAgauUGUGCa -3'
miRNA:   3'- -CGUUaAC-GCUGCGCGg---CUauuGCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.