miRNA display CGI


Results 41 - 60 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22911 3' -49.8 NC_005137.2 + 15510 0.67 0.993676
Target:  5'- gGCGGUUGUGACGUuaUaGUAcCGUGUg -3'
miRNA:   3'- -CGUUAACGCUGCGcgGcUAUuGCACG- -5'
22911 3' -49.8 NC_005137.2 + 5339 0.67 0.988971
Target:  5'- uGCAAgUGCuGAUGgGCCGGUuuaugcauuuUGUGCg -3'
miRNA:   3'- -CGUUaACG-CUGCgCGGCUAuu--------GCACG- -5'
22911 3' -49.8 NC_005137.2 + 70695 0.67 0.988971
Target:  5'- uCGGcgGUGGCGCuGCCGAguUAACG-GCu -3'
miRNA:   3'- cGUUaaCGCUGCG-CGGCU--AUUGCaCG- -5'
22911 3' -49.8 NC_005137.2 + 76190 0.67 0.989398
Target:  5'- gGUAAUUGCguuuuugGugGCGCuuuuuauguacguugCGGUAGCGcUGCg -3'
miRNA:   3'- -CGUUAACG-------CugCGCG---------------GCUAUUGC-ACG- -5'
22911 3' -49.8 NC_005137.2 + 125025 0.67 0.989537
Target:  5'- uCGGUUGCGGCGUggcgcaggcaacggaGCCGGgcgGCGcgGCg -3'
miRNA:   3'- cGUUAACGCUGCG---------------CGGCUau-UGCa-CG- -5'
22911 3' -49.8 NC_005137.2 + 12092 0.67 0.990345
Target:  5'- cGCAAgUGCGAguUGCGCugcagaaaCGGUGACgGUGUu -3'
miRNA:   3'- -CGUUaACGCU--GCGCG--------GCUAUUG-CACG- -5'
22911 3' -49.8 NC_005137.2 + 12684 0.67 0.990345
Target:  5'- uGCAGUUugaGCaGCGCGUCGG-AACG-GCg -3'
miRNA:   3'- -CGUUAA---CGcUGCGCGGCUaUUGCaCG- -5'
22911 3' -49.8 NC_005137.2 + 95267 0.67 0.990345
Target:  5'- uGCAGaUGCacGAUGCGgaCGGUAACGaGCa -3'
miRNA:   3'- -CGUUaACG--CUGCGCg-GCUAUUGCaCG- -5'
22911 3' -49.8 NC_005137.2 + 112401 0.67 0.990345
Target:  5'- cGCGAUcGCGcacgGCGCGCCau---UGUGCa -3'
miRNA:   3'- -CGUUAaCGC----UGCGCGGcuauuGCACG- -5'
22911 3' -49.8 NC_005137.2 + 33048 0.67 0.991581
Target:  5'- aGCAAaUGcCGACGCGUucuaGAgauUGUGCa -3'
miRNA:   3'- -CGUUaAC-GCUGCGCGg---CUauuGCACG- -5'
22911 3' -49.8 NC_005137.2 + 117569 0.67 0.992583
Target:  5'- gGCAAagUGCG-C-CGCCGGUgcggcugacgggcGACGUGUa -3'
miRNA:   3'- -CGUUa-ACGCuGcGCGGCUA-------------UUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 28179 0.67 0.992688
Target:  5'- cGCAAUaagGCGACaGCGUC----GCGUGUa -3'
miRNA:   3'- -CGUUAa--CGCUG-CGCGGcuauUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 64772 0.67 0.992688
Target:  5'- cGCAAUUGUauGACGUGuuGAacgcUAGCcgcgccaacauGUGCa -3'
miRNA:   3'- -CGUUAACG--CUGCGCggCU----AUUG-----------CACG- -5'
22911 3' -49.8 NC_005137.2 + 95644 0.67 0.992688
Target:  5'- cCGcgUGCGccgUGCGCCGAcgGGCaaGUGCg -3'
miRNA:   3'- cGUuaACGCu--GCGCGGCUa-UUG--CACG- -5'
22911 3' -49.8 NC_005137.2 + 26680 0.67 0.993676
Target:  5'- cGCAcgUGCGAacguuugaugGCGCUGA--ACGgcgGCg -3'
miRNA:   3'- -CGUuaACGCUg---------CGCGGCUauUGCa--CG- -5'
22911 3' -49.8 NC_005137.2 + 122148 0.67 0.993676
Target:  5'- uGUAGUUGUGcCGUGUCGuUGAUGaGCg -3'
miRNA:   3'- -CGUUAACGCuGCGCGGCuAUUGCaCG- -5'
22911 3' -49.8 NC_005137.2 + 97074 0.68 0.987288
Target:  5'- aUAcgUGCG-CGCGaaugccggcaaacCCGAcAACGUGCg -3'
miRNA:   3'- cGUuaACGCuGCGC-------------GGCUaUUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 25991 0.68 0.987449
Target:  5'- gGCGGUUGU-ACGCGCUGAUAaacAUGgGUa -3'
miRNA:   3'- -CGUUAACGcUGCGCGGCUAU---UGCaCG- -5'
22911 3' -49.8 NC_005137.2 + 128975 0.68 0.987449
Target:  5'- aGCAAauaaggcGCGACcuaaauagucuGCGCCGc-AGCGUGCa -3'
miRNA:   3'- -CGUUaa-----CGCUG-----------CGCGGCuaUUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 42777 0.68 0.983925
Target:  5'- --cGUUGCGaggcaGCGUGCCGAUAAacaUGCc -3'
miRNA:   3'- cguUAACGC-----UGCGCGGCUAUUgc-ACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.