miRNA display CGI


Results 41 - 60 of 137 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22911 3' -49.8 NC_005137.2 + 10699 0.73 0.864113
Target:  5'- --cGUUuCGugGCGuUCGAUGGCGUGCa -3'
miRNA:   3'- cguUAAcGCugCGC-GGCUAUUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 119575 0.73 0.871888
Target:  5'- -----aGCGACGCacGCUGAgcACGUGCc -3'
miRNA:   3'- cguuaaCGCUGCG--CGGCUauUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 108574 0.73 0.871888
Target:  5'- cGUGAUcgGCGGCGCGCCcGUgugcuuuuacGugGUGCg -3'
miRNA:   3'- -CGUUAa-CGCUGCGCGGcUA----------UugCACG- -5'
22911 3' -49.8 NC_005137.2 + 4232 0.73 0.879427
Target:  5'- uGCAAUUGCGuCG-GUCGGcgacACGUGCa -3'
miRNA:   3'- -CGUUAACGCuGCgCGGCUau--UGCACG- -5'
22911 3' -49.8 NC_005137.2 + 96421 0.72 0.89378
Target:  5'- cGCGcg-GCGACGCGCCcgccGCGUuGCg -3'
miRNA:   3'- -CGUuaaCGCUGCGCGGcuauUGCA-CG- -5'
22911 3' -49.8 NC_005137.2 + 56315 0.72 0.900583
Target:  5'- -----aGCGACGCGCaaauuaAACGUGCa -3'
miRNA:   3'- cguuaaCGCUGCGCGgcua--UUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 51702 0.72 0.913424
Target:  5'- gGCAccGUUGCG-CGCGUCGGaagcgcauguACGUGCc -3'
miRNA:   3'- -CGU--UAACGCuGCGCGGCUau--------UGCACG- -5'
22911 3' -49.8 NC_005137.2 + 100081 0.71 0.930738
Target:  5'- -----cGCGGCGCGCgGc--ACGUGCu -3'
miRNA:   3'- cguuaaCGCUGCGCGgCuauUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 41832 0.71 0.935987
Target:  5'- cGCGuUUGUua-GCGCUGGUGAgGUGCa -3'
miRNA:   3'- -CGUuAACGcugCGCGGCUAUUgCACG- -5'
22911 3' -49.8 NC_005137.2 + 122060 0.71 0.940976
Target:  5'- -aAAUUGCGGCGUGuCCGGgucGGCG-GCc -3'
miRNA:   3'- cgUUAACGCUGCGC-GGCUa--UUGCaCG- -5'
22911 3' -49.8 NC_005137.2 + 63114 0.71 0.940976
Target:  5'- ---cUUGCGcuuCGCGCCGGUcGCG-GCu -3'
miRNA:   3'- cguuAACGCu--GCGCGGCUAuUGCaCG- -5'
22911 3' -49.8 NC_005137.2 + 5241 0.68 0.981904
Target:  5'- -aAAUUGCcACGCGCCGcucgaAACGcGCg -3'
miRNA:   3'- cgUUAACGcUGCGCGGCua---UUGCaCG- -5'
22911 3' -49.8 NC_005137.2 + 90688 0.68 0.980603
Target:  5'- -----cGCGACGCcgacuuuuauuauccGCUGGUGguGCGUGCc -3'
miRNA:   3'- cguuaaCGCUGCG---------------CGGCUAU--UGCACG- -5'
22911 3' -49.8 NC_005137.2 + 110419 0.69 0.971882
Target:  5'- cGCAGcugGCaacgGGCGCGaCGGUGAgCGUGCa -3'
miRNA:   3'- -CGUUaa-CG----CUGCGCgGCUAUU-GCACG- -5'
22911 3' -49.8 NC_005137.2 + 41667 0.69 0.971882
Target:  5'- -----aGCGACGUGCCGAgcucGACGa-- -3'
miRNA:   3'- cguuaaCGCUGCGCGGCUa---UUGCacg -5'
22911 3' -49.8 NC_005137.2 + 18562 0.69 0.96885
Target:  5'- cGCAucguGUUGCGAcCGCGCCGuuucaauuGCGagauUGCc -3'
miRNA:   3'- -CGU----UAACGCU-GCGCGGCuau-----UGC----ACG- -5'
22911 3' -49.8 NC_005137.2 + 106398 0.69 0.965593
Target:  5'- ---uUUGaCGACGCGUCGGUcAUGUGg -3'
miRNA:   3'- cguuAAC-GCUGCGCGGCUAuUGCACg -5'
22911 3' -49.8 NC_005137.2 + 105713 0.7 0.95018
Target:  5'- ---uUUGCGACcUGCUGuugGGCGUGCa -3'
miRNA:   3'- cguuAACGCUGcGCGGCua-UUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 95506 0.7 0.95018
Target:  5'- cGCAuc-GCuGACGUgGCCGGUGGCGacuUGCg -3'
miRNA:   3'- -CGUuaaCG-CUGCG-CGGCUAUUGC---ACG- -5'
22911 3' -49.8 NC_005137.2 + 17470 0.7 0.962103
Target:  5'- cGCAgg-GUGugGgGCUGGUgGugGUGCa -3'
miRNA:   3'- -CGUuaaCGCugCgCGGCUA-UugCACG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.