miRNA display CGI


Results 41 - 60 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22911 3' -49.8 NC_005137.2 + 73429 0.7 0.95018
Target:  5'- ---cUUGCGGCGCGCUGGgcucGACGcGUu -3'
miRNA:   3'- cguuAACGCUGCGCGGCUa---UUGCaCG- -5'
22911 3' -49.8 NC_005137.2 + 107599 0.7 0.954401
Target:  5'- aGCGAUUGUGuugaGCaGCCGuUGACGUuGCc -3'
miRNA:   3'- -CGUUAACGCug--CG-CGGCuAUUGCA-CG- -5'
22911 3' -49.8 NC_005137.2 + 7447 0.7 0.958374
Target:  5'- uGCAAUcGCGAgGCacGCUGuuUGugGUGCa -3'
miRNA:   3'- -CGUUAaCGCUgCG--CGGCu-AUugCACG- -5'
22911 3' -49.8 NC_005137.2 + 62276 0.7 0.958374
Target:  5'- cGCu-UUGCGAacuaguaacgguCGCGCUGGUGG-GUGCa -3'
miRNA:   3'- -CGuuAACGCU------------GCGCGGCUAUUgCACG- -5'
22911 3' -49.8 NC_005137.2 + 118792 0.7 0.958374
Target:  5'- aGCGAUgaagcguuacaUGCGcGCGUGCCuAUggUGUGCc -3'
miRNA:   3'- -CGUUA-----------ACGC-UGCGCGGcUAuuGCACG- -5'
22911 3' -49.8 NC_005137.2 + 30931 0.7 0.958374
Target:  5'- aGCAcgUGCG-CGCGCCGcgGcacaaaGCaUGCu -3'
miRNA:   3'- -CGUuaACGCuGCGCGGCuaU------UGcACG- -5'
22911 3' -49.8 NC_005137.2 + 69279 0.7 0.959894
Target:  5'- cGCGGUcGCGGCGCGUuuaggcguaauuuuaUGAU--CGUGCa -3'
miRNA:   3'- -CGUUAaCGCUGCGCG---------------GCUAuuGCACG- -5'
22911 3' -49.8 NC_005137.2 + 63789 0.7 0.96174
Target:  5'- cGCAacguggucgaaguGUUGCGAUGCGgaGuaaacGACGUGCg -3'
miRNA:   3'- -CGU-------------UAACGCUGCGCggCua---UUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 111530 0.7 0.962103
Target:  5'- aGCGGcUUGUGAUGUuuuuGCCGAgcuuuuGCGUGUg -3'
miRNA:   3'- -CGUU-AACGCUGCG----CGGCUau----UGCACG- -5'
22911 3' -49.8 NC_005137.2 + 17470 0.7 0.962103
Target:  5'- cGCAgg-GUGugGgGCUGGUgGugGUGCa -3'
miRNA:   3'- -CGUuaaCGCugCgCGGCUA-UugCACG- -5'
22911 3' -49.8 NC_005137.2 + 99611 0.69 0.965593
Target:  5'- aCGGUUGgUGACGCGC----AACGUGCa -3'
miRNA:   3'- cGUUAAC-GCUGCGCGgcuaUUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 31421 0.69 0.965593
Target:  5'- gGCAGcUGCacguCGaCGCCGcUAAUGUGCa -3'
miRNA:   3'- -CGUUaACGcu--GC-GCGGCuAUUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 106398 0.69 0.965593
Target:  5'- ---uUUGaCGACGCGUCGGUcAUGUGg -3'
miRNA:   3'- cguuAAC-GCUGCGCGGCUAuUGCACg -5'
22911 3' -49.8 NC_005137.2 + 35517 0.69 0.968217
Target:  5'- aGCGAUgcgcccgUGCGGCGCGCauccgacCGGU-ACGUuGCa -3'
miRNA:   3'- -CGUUA-------ACGCUGCGCG-------GCUAuUGCA-CG- -5'
22911 3' -49.8 NC_005137.2 + 18562 0.69 0.96885
Target:  5'- cGCAucguGUUGCGAcCGCGCCGuuucaauuGCGagauUGCc -3'
miRNA:   3'- -CGU----UAACGCU-GCGCGGCuau-----UGC----ACG- -5'
22911 3' -49.8 NC_005137.2 + 95602 0.69 0.96885
Target:  5'- -uGAUggGCG-CGCGCCGAUuccaaauGCGUcGCg -3'
miRNA:   3'- cgUUAa-CGCuGCGCGGCUAu------UGCA-CG- -5'
22911 3' -49.8 NC_005137.2 + 57222 0.69 0.971589
Target:  5'- aGCAGgccgugGCGAacgaggcuacgccCGCGCCaaacGAUGACGUGa -3'
miRNA:   3'- -CGUUaa----CGCU-------------GCGCGG----CUAUUGCACg -5'
22911 3' -49.8 NC_005137.2 + 41667 0.69 0.971882
Target:  5'- -----aGCGACGUGCCGAgcucGACGa-- -3'
miRNA:   3'- cguuaaCGCUGCGCGGCUa---UUGCacg -5'
22911 3' -49.8 NC_005137.2 + 61096 0.69 0.971882
Target:  5'- aCGGUUGCGugGCGCau-UGGCG-GUc -3'
miRNA:   3'- cGUUAACGCugCGCGgcuAUUGCaCG- -5'
22911 3' -49.8 NC_005137.2 + 110419 0.69 0.971882
Target:  5'- cGCAGcugGCaacgGGCGCGaCGGUGAgCGUGCa -3'
miRNA:   3'- -CGUUaa-CG----CUGCGCgGCUAUU-GCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.