miRNA display CGI


Results 41 - 60 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22911 3' -49.8 NC_005137.2 + 41963 0.66 0.996015
Target:  5'- -----cGUGGCGCGCCG-UGACa-GCg -3'
miRNA:   3'- cguuaaCGCUGCGCGGCuAUUGcaCG- -5'
22911 3' -49.8 NC_005137.2 + 42586 0.66 0.996615
Target:  5'- -uGAUUGCG-CGCGgCGGacacaUnACGUGUc -3'
miRNA:   3'- cgUUAACGCuGCGCgGCU-----AuUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 42777 0.68 0.983925
Target:  5'- --cGUUGCGaggcaGCGUGCCGAUAAacaUGCc -3'
miRNA:   3'- cguUAACGC-----UGCGCGGCUAUUgc-ACG- -5'
22911 3' -49.8 NC_005137.2 + 43931 0.66 0.996615
Target:  5'- gGCAAacccGCuGGCGCGCUGGUAguaGCGUucguugGCg -3'
miRNA:   3'- -CGUUaa--CG-CUGCGCGGCUAU---UGCA------CG- -5'
22911 3' -49.8 NC_005137.2 + 44007 0.66 0.997138
Target:  5'- cGCGAUccGCGGCGUuUCGc--ACGUGCa -3'
miRNA:   3'- -CGUUAa-CGCUGCGcGGCuauUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 46321 0.66 0.995885
Target:  5'- cGCAcUUGuUGAUGCGCaCGuccgacacuuGCGUGCu -3'
miRNA:   3'- -CGUuAAC-GCUGCGCG-GCuau-------UGCACG- -5'
22911 3' -49.8 NC_005137.2 + 46881 0.66 0.99595
Target:  5'- gGCuggugGUGGCGCGCguggaaacgguguCGAUGuccguugcgcGCGUGCg -3'
miRNA:   3'- -CGuuaa-CGCUGCGCG-------------GCUAU----------UGCACG- -5'
22911 3' -49.8 NC_005137.2 + 51285 0.68 0.981904
Target:  5'- cGCAAuUUGCGGCGgGCagCGGcaUAACGagUGCg -3'
miRNA:   3'- -CGUU-AACGCUGCgCG--GCU--AUUGC--ACG- -5'
22911 3' -49.8 NC_005137.2 + 51702 0.72 0.913424
Target:  5'- gGCAccGUUGCG-CGCGUCGGaagcgcauguACGUGCc -3'
miRNA:   3'- -CGU--UAACGCuGCGCGGCUau--------UGCACG- -5'
22911 3' -49.8 NC_005137.2 + 51908 0.66 0.994554
Target:  5'- aGCGGUUGCGACaCGUgGAaaauAUGUGa -3'
miRNA:   3'- -CGUUAACGCUGcGCGgCUau--UGCACg -5'
22911 3' -49.8 NC_005137.2 + 56291 0.68 0.981904
Target:  5'- ----cUGCGAaGUGCCGcugGACGUGUu -3'
miRNA:   3'- cguuaACGCUgCGCGGCua-UUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 56315 0.72 0.900583
Target:  5'- -----aGCGACGCGCaaauuaAACGUGCa -3'
miRNA:   3'- cguuaaCGCUGCGCGgcua--UUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 56596 0.79 0.544686
Target:  5'- cGCGAcggGCGACGUGCuCGAUAaaaACGUGUu -3'
miRNA:   3'- -CGUUaa-CGCUGCGCG-GCUAU---UGCACG- -5'
22911 3' -49.8 NC_005137.2 + 56889 0.66 0.995331
Target:  5'- cCAAUUGCGuuuCGCGCaUGAUAAgagGCg -3'
miRNA:   3'- cGUUAACGCu--GCGCG-GCUAUUgcaCG- -5'
22911 3' -49.8 NC_005137.2 + 57222 0.69 0.971589
Target:  5'- aGCAGgccgugGCGAacgaggcuacgccCGCGCCaaacGAUGACGUGa -3'
miRNA:   3'- -CGUUaa----CGCU-------------GCGCGG----CUAUUGCACg -5'
22911 3' -49.8 NC_005137.2 + 58617 0.69 0.975761
Target:  5'- aGUAAaauUUGUuGCGcCGCCGAauugcgcguguacacUAGCGUGCa -3'
miRNA:   3'- -CGUU---AACGcUGC-GCGGCU---------------AUUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 61096 0.69 0.971882
Target:  5'- aCGGUUGCGugGCGCau-UGGCG-GUc -3'
miRNA:   3'- cGUUAACGCugCGCGgcuAUUGCaCG- -5'
22911 3' -49.8 NC_005137.2 + 62276 0.7 0.958374
Target:  5'- cGCu-UUGCGAacuaguaacgguCGCGCUGGUGG-GUGCa -3'
miRNA:   3'- -CGuuAACGCU------------GCGCGGCUAUUgCACG- -5'
22911 3' -49.8 NC_005137.2 + 63012 0.68 0.981904
Target:  5'- aGCGuAUUGCucGCGCGUggccaaCGAcGACGUGCg -3'
miRNA:   3'- -CGU-UAACGc-UGCGCG------GCUaUUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 63114 0.71 0.940976
Target:  5'- ---cUUGCGcuuCGCGCCGGUcGCG-GCu -3'
miRNA:   3'- cguuAACGCu--GCGCGGCUAuUGCaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.