miRNA display CGI


Results 41 - 60 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22911 3' -49.8 NC_005137.2 + 103806 0.66 0.996615
Target:  5'- aGCAGUUgcuggugugcgGCGGCGgGuuGGUGcACG-GCa -3'
miRNA:   3'- -CGUUAA-----------CGCUGCgCggCUAU-UGCaCG- -5'
22911 3' -49.8 NC_005137.2 + 102745 0.66 0.994554
Target:  5'- aGCAcgUa-GACGaCG-CGGUGGCGUGCg -3'
miRNA:   3'- -CGUuaAcgCUGC-GCgGCUAUUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 100081 0.71 0.930738
Target:  5'- -----cGCGGCGCGCgGc--ACGUGCu -3'
miRNA:   3'- cguuaaCGCUGCGCGgCuauUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 99987 0.68 0.981904
Target:  5'- aGCAucagccCGACguagcgGCGCCGAccAGCGUGCg -3'
miRNA:   3'- -CGUuaac--GCUG------CGCGGCUa-UUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 99813 0.69 0.974695
Target:  5'- aCAAggGCGACGCggGCCGGUuGCGccGUa -3'
miRNA:   3'- cGUUaaCGCUGCG--CGGCUAuUGCa-CG- -5'
22911 3' -49.8 NC_005137.2 + 99611 0.69 0.965593
Target:  5'- aCGGUUGgUGACGCGC----AACGUGCa -3'
miRNA:   3'- cGUUAAC-GCUGCGCGgcuaUUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 98397 0.67 0.988971
Target:  5'- cCGAUUGUGAauaggUGUGCCGGUGA--UGCa -3'
miRNA:   3'- cGUUAACGCU-----GCGCGGCUAUUgcACG- -5'
22911 3' -49.8 NC_005137.2 + 97074 0.68 0.987288
Target:  5'- aUAcgUGCG-CGCGaaugccggcaaacCCGAcAACGUGCg -3'
miRNA:   3'- cGUuaACGCuGCGC-------------GGCUaUUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 96421 0.72 0.89378
Target:  5'- cGCGcg-GCGACGCGCCcgccGCGUuGCg -3'
miRNA:   3'- -CGUuaaCGCUGCGCGGcuauUGCA-CG- -5'
22911 3' -49.8 NC_005137.2 + 95644 0.67 0.992688
Target:  5'- cCGcgUGCGccgUGCGCCGAcgGGCaaGUGCg -3'
miRNA:   3'- cGUuaACGCu--GCGCGGCUa-UUG--CACG- -5'
22911 3' -49.8 NC_005137.2 + 95602 0.69 0.96885
Target:  5'- -uGAUggGCG-CGCGCCGAUuccaaauGCGUcGCg -3'
miRNA:   3'- cgUUAa-CGCuGCGCGGCUAu------UGCA-CG- -5'
22911 3' -49.8 NC_005137.2 + 95506 0.7 0.95018
Target:  5'- cGCAuc-GCuGACGUgGCCGGUGGCGacuUGCg -3'
miRNA:   3'- -CGUuaaCG-CUGCG-CGGCUAUUGC---ACG- -5'
22911 3' -49.8 NC_005137.2 + 95267 0.67 0.990345
Target:  5'- uGCAGaUGCacGAUGCGgaCGGUAACGaGCa -3'
miRNA:   3'- -CGUUaACG--CUGCGCg-GCUAUUGCaCG- -5'
22911 3' -49.8 NC_005137.2 + 92224 0.73 0.871888
Target:  5'- aGCGAa-GUGACGCGCaucaccaaCGAcAGCGUGCg -3'
miRNA:   3'- -CGUUaaCGCUGCGCG--------GCUaUUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 91234 0.7 0.949744
Target:  5'- aGCAGUgUGCcACGUGCCGggGAauaugacggacguCGUGCa -3'
miRNA:   3'- -CGUUA-ACGcUGCGCGGCuaUU-------------GCACG- -5'
22911 3' -49.8 NC_005137.2 + 90907 0.66 0.995331
Target:  5'- aGCAcGUUGCGcGCGUGCuCGAUcauGAUGaGCa -3'
miRNA:   3'- -CGU-UAACGC-UGCGCG-GCUA---UUGCaCG- -5'
22911 3' -49.8 NC_005137.2 + 90688 0.68 0.980603
Target:  5'- -----cGCGACGCcgacuuuuauuauccGCUGGUGguGCGUGCc -3'
miRNA:   3'- cguuaaCGCUGCG---------------CGGCUAU--UGCACG- -5'
22911 3' -49.8 NC_005137.2 + 86872 0.66 0.997138
Target:  5'- -gAAUUGCGAuCGCaCCGuu-GCgGUGCg -3'
miRNA:   3'- cgUUAACGCU-GCGcGGCuauUG-CACG- -5'
22911 3' -49.8 NC_005137.2 + 84731 0.66 0.996015
Target:  5'- aGCAcgUGCccgacccgcccGaACGCGCCGA---CGUGUu -3'
miRNA:   3'- -CGUuaACG-----------C-UGCGCGGCUauuGCACG- -5'
22911 3' -49.8 NC_005137.2 + 82742 0.76 0.724762
Target:  5'- uGCGAagGCGAUGaCGCCGAgGAUGUGg -3'
miRNA:   3'- -CGUUaaCGCUGC-GCGGCUaUUGCACg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.