Results 21 - 40 of 137 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22911 | 3' | -49.8 | NC_005137.2 | + | 112013 | 0.74 | 0.821957 |
Target: 5'- aGCAAacguaccGUGACGCGCUGc-GACGUGCu -3' miRNA: 3'- -CGUUaa-----CGCUGCGCGGCuaUUGCACG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 111530 | 0.7 | 0.962103 |
Target: 5'- aGCGGcUUGUGAUGUuuuuGCCGAgcuuuuGCGUGUg -3' miRNA: 3'- -CGUU-AACGCUGCG----CGGCUau----UGCACG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 111343 | 0.66 | 0.994554 |
Target: 5'- -aGGUUGUcguaGAUGCuGCUGGUAGCGgGCg -3' miRNA: 3'- cgUUAACG----CUGCG-CGGCUAUUGCaCG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 110710 | 0.66 | 0.997138 |
Target: 5'- cGCGcgUGCGcaacgguguGCGCGCaGAgcgcuUGUGCg -3' miRNA: 3'- -CGUuaACGC---------UGCGCGgCUauu--GCACG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 110630 | 0.66 | 0.996615 |
Target: 5'- gGCcg-UGCacaaACGCGCCGAcGGCGUuugGCu -3' miRNA: 3'- -CGuuaACGc---UGCGCGGCUaUUGCA---CG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 110619 | 0.66 | 0.997138 |
Target: 5'- gGCGGUUagugaccccGUGuACGCGCCGGccGCGgugUGCa -3' miRNA: 3'- -CGUUAA---------CGC-UGCGCGGCUauUGC---ACG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 110572 | 0.66 | 0.997138 |
Target: 5'- cGCAccUGCGucuugGCGCGCCcAUccUGUGCg -3' miRNA: 3'- -CGUuaACGC-----UGCGCGGcUAuuGCACG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 110419 | 0.69 | 0.971882 |
Target: 5'- cGCAGcugGCaacgGGCGCGaCGGUGAgCGUGCa -3' miRNA: 3'- -CGUUaa-CG----CUGCGCgGCUAUU-GCACG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 110310 | 0.66 | 0.996015 |
Target: 5'- gGCGAUcGUGACGUGUUuGUGcGCGUGUu -3' miRNA: 3'- -CGUUAaCGCUGCGCGGcUAU-UGCACG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 109522 | 0.75 | 0.775103 |
Target: 5'- uGCAcaaGUcGCuGCGUGCCGGUAAUGUGUu -3' miRNA: 3'- -CGU---UAaCGcUGCGCGGCUAUUGCACG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 108574 | 0.73 | 0.871888 |
Target: 5'- cGUGAUcgGCGGCGCGCCcGUgugcuuuuacGugGUGCg -3' miRNA: 3'- -CGUUAa-CGCUGCGCGGcUA----------UugCACG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 108149 | 0.66 | 0.996615 |
Target: 5'- uCGGgcgGCGGCgGCGUCGGUAuGCGcGCg -3' miRNA: 3'- cGUUaa-CGCUG-CGCGGCUAU-UGCaCG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 107599 | 0.7 | 0.954401 |
Target: 5'- aGCGAUUGUGuugaGCaGCCGuUGACGUuGCc -3' miRNA: 3'- -CGUUAACGCug--CG-CGGCuAUUGCA-CG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 107147 | 0.68 | 0.987449 |
Target: 5'- gGCGGguuggGUGACGCcgaccgucaaaaGCUGAgcGACGUGCu -3' miRNA: 3'- -CGUUaa---CGCUGCG------------CGGCUa-UUGCACG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 106398 | 0.69 | 0.965593 |
Target: 5'- ---uUUGaCGACGCGUCGGUcAUGUGg -3' miRNA: 3'- cguuAAC-GCUGCGCGGCUAuUGCACg -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 106204 | 0.66 | 0.995331 |
Target: 5'- cGCAcgUGgGACGCGgUCGccaagAACGgGCa -3' miRNA: 3'- -CGUuaACgCUGCGC-GGCua---UUGCaCG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 105713 | 0.7 | 0.95018 |
Target: 5'- ---uUUGCGACcUGCUGuugGGCGUGCa -3' miRNA: 3'- cguuAACGCUGcGCGGCua-UUGCACG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 104986 | 0.71 | 0.930738 |
Target: 5'- uGCAA-UGCGGCGUGU---UAAUGUGCa -3' miRNA: 3'- -CGUUaACGCUGCGCGgcuAUUGCACG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 104645 | 0.72 | 0.886727 |
Target: 5'- cGCuggcUGCGuuuuGCGUGCCGGUAGCGUa- -3' miRNA: 3'- -CGuua-ACGC----UGCGCGGCUAUUGCAcg -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 104342 | 0.68 | 0.979698 |
Target: 5'- cGCAcgUGCG-UGCGUCGu---CGUGUu -3' miRNA: 3'- -CGUuaACGCuGCGCGGCuauuGCACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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