Results 61 - 80 of 137 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22911 | 3' | -49.8 | NC_005137.2 | + | 63789 | 0.7 | 0.96174 |
Target: 5'- cGCAacguggucgaaguGUUGCGAUGCGgaGuaaacGACGUGCg -3' miRNA: 3'- -CGU-------------UAACGCUGCGCggCua---UUGCACG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 64772 | 0.67 | 0.992688 |
Target: 5'- cGCAAUUGUauGACGUGuuGAacgcUAGCcgcgccaacauGUGCa -3' miRNA: 3'- -CGUUAACG--CUGCGCggCU----AUUG-----------CACG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 67932 | 0.66 | 0.994554 |
Target: 5'- aGCAAga-CGACGUGuuGGUGAgCG-GCg -3' miRNA: 3'- -CGUUaacGCUGCGCggCUAUU-GCaCG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 68445 | 0.69 | 0.974695 |
Target: 5'- cGCAAUUGCGAaaguauccUGUGUCGA---CGUGUc -3' miRNA: 3'- -CGUUAACGCU--------GCGCGGCUauuGCACG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 69279 | 0.7 | 0.959894 |
Target: 5'- cGCGGUcGCGGCGCGUuuaggcguaauuuuaUGAU--CGUGCa -3' miRNA: 3'- -CGUUAaCGCUGCGCG---------------GCUAuuGCACG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 70336 | 0.66 | 0.995331 |
Target: 5'- gGCGucgGCGAagGCGUCGGUGAagGUGUu -3' miRNA: 3'- -CGUuaaCGCUg-CGCGGCUAUUg-CACG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 70695 | 0.67 | 0.988971 |
Target: 5'- uCGGcgGUGGCGCuGCCGAguUAACG-GCu -3' miRNA: 3'- cGUUaaCGCUGCG-CGGCU--AUUGCaCG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 71356 | 0.72 | 0.89378 |
Target: 5'- aGCAAUUuguacaacaGCGGCGUGCCGuugcaaaaaGUGGCGcGCu -3' miRNA: 3'- -CGUUAA---------CGCUGCGCGGC---------UAUUGCaCG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 72338 | 0.73 | 0.856109 |
Target: 5'- cGCgAAUUGCGcgaGCuGCGCCGcuccGCGUGCa -3' miRNA: 3'- -CG-UUAACGC---UG-CGCGGCuau-UGCACG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 73429 | 0.7 | 0.95018 |
Target: 5'- ---cUUGCGGCGCGCUGGgcucGACGcGUu -3' miRNA: 3'- cguuAACGCUGCGCGGCUa---UUGCaCG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 74281 | 0.66 | 0.997138 |
Target: 5'- uGCAAccGUGcCGUGCCGGcGcgaaagccaacACGUGCa -3' miRNA: 3'- -CGUUaaCGCuGCGCGGCUaU-----------UGCACG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 76190 | 0.67 | 0.989398 |
Target: 5'- gGUAAUUGCguuuuugGugGCGCuuuuuauguacguugCGGUAGCGcUGCg -3' miRNA: 3'- -CGUUAACG-------CugCGCG---------------GCUAUUGC-ACG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 79736 | 0.75 | 0.765273 |
Target: 5'- cGCaAAUUGCGACGCaaugGCCGcguUAGCGUugGCg -3' miRNA: 3'- -CG-UUAACGCUGCG----CGGCu--AUUGCA--CG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 81267 | 0.72 | 0.886727 |
Target: 5'- aGCAAacaaaCGACGCGCCGAUGAa--GCg -3' miRNA: 3'- -CGUUaac--GCUGCGCGGCUAUUgcaCG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 81388 | 0.67 | 0.991581 |
Target: 5'- gGCAAcgGCGAcCGCauuCCGu--ACGUGCu -3' miRNA: 3'- -CGUUaaCGCU-GCGc--GGCuauUGCACG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 81424 | 0.66 | 0.997089 |
Target: 5'- aGCu-UUGauGCGCaGCCcagcacuGAUAACGUGCa -3' miRNA: 3'- -CGuuAACgcUGCG-CGG-------CUAUUGCACG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 81796 | 0.66 | 0.995331 |
Target: 5'- aGUuuUUGCGucGCGCGUCGcGUaucGAUGUGCc -3' miRNA: 3'- -CGuuAACGC--UGCGCGGC-UA---UUGCACG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 82742 | 0.76 | 0.724762 |
Target: 5'- uGCGAagGCGAUGaCGCCGAgGAUGUGg -3' miRNA: 3'- -CGUUaaCGCUGC-GCGGCUaUUGCACg -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 84731 | 0.66 | 0.996015 |
Target: 5'- aGCAcgUGCccgacccgcccGaACGCGCCGA---CGUGUu -3' miRNA: 3'- -CGUuaACG-----------C-UGCGCGGCUauuGCACG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 86872 | 0.66 | 0.997138 |
Target: 5'- -gAAUUGCGAuCGCaCCGuu-GCgGUGCg -3' miRNA: 3'- cgUUAACGCU-GCGcGGCuauUG-CACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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