miRNA display CGI


Results 61 - 80 of 137 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22911 3' -49.8 NC_005137.2 + 99813 0.69 0.974695
Target:  5'- aCAAggGCGACGCggGCCGGUuGCGccGUa -3'
miRNA:   3'- cGUUaaCGCUGCG--CGGCUAuUGCa-CG- -5'
22911 3' -49.8 NC_005137.2 + 68445 0.69 0.974695
Target:  5'- cGCAAUUGCGAaaguauccUGUGUCGA---CGUGUc -3'
miRNA:   3'- -CGUUAACGCU--------GCGCGGCUauuGCACG- -5'
22911 3' -49.8 NC_005137.2 + 58617 0.69 0.975761
Target:  5'- aGUAAaauUUGUuGCGcCGCCGAauugcgcguguacacUAGCGUGCa -3'
miRNA:   3'- -CGUU---AACGcUGC-GCGGCU---------------AUUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 32435 0.69 0.977298
Target:  5'- cGCAAcagUGCGugauguaccaGCGCGuuGccaaaauacAUGGCGUGCa -3'
miRNA:   3'- -CGUUa--ACGC----------UGCGCggC---------UAUUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 15259 0.69 0.977298
Target:  5'- -----cGCGGCGCGCaCGuu-GCGUuGCa -3'
miRNA:   3'- cguuaaCGCUGCGCG-GCuauUGCA-CG- -5'
22911 3' -49.8 NC_005137.2 + 104342 0.68 0.979698
Target:  5'- cGCAcgUGCG-UGCGUCGu---CGUGUu -3'
miRNA:   3'- -CGUuaACGCuGCGCGGCuauuGCACG- -5'
22911 3' -49.8 NC_005137.2 + 90688 0.68 0.980603
Target:  5'- -----cGCGACGCcgacuuuuauuauccGCUGGUGguGCGUGCc -3'
miRNA:   3'- cguuaaCGCUGCG---------------CGGCUAU--UGCACG- -5'
22911 3' -49.8 NC_005137.2 + 5241 0.68 0.981904
Target:  5'- -aAAUUGCcACGCGCCGcucgaAACGcGCg -3'
miRNA:   3'- cgUUAACGcUGCGCGGCua---UUGCaCG- -5'
22911 3' -49.8 NC_005137.2 + 56291 0.68 0.981904
Target:  5'- ----cUGCGAaGUGCCGcugGACGUGUu -3'
miRNA:   3'- cguuaACGCUgCGCGGCua-UUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 99987 0.68 0.981904
Target:  5'- aGCAucagccCGACguagcgGCGCCGAccAGCGUGCg -3'
miRNA:   3'- -CGUuaac--GCUG------CGCGGCUa-UUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 63012 0.68 0.981904
Target:  5'- aGCGuAUUGCucGCGCGUggccaaCGAcGACGUGCg -3'
miRNA:   3'- -CGU-UAACGc-UGCGCG------GCUaUUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 51285 0.68 0.981904
Target:  5'- cGCAAuUUGCGGCGgGCagCGGcaUAACGagUGCg -3'
miRNA:   3'- -CGUU-AACGCUGCgCG--GCU--AUUGC--ACG- -5'
22911 3' -49.8 NC_005137.2 + 30974 0.68 0.981904
Target:  5'- -----cGCGcCGCGUCGGaccGCGUGCu -3'
miRNA:   3'- cguuaaCGCuGCGCGGCUau-UGCACG- -5'
22911 3' -49.8 NC_005137.2 + 118935 0.68 0.983925
Target:  5'- uGCGGUcgGCGACGUgauuGCCGAccgacUGGCGUa- -3'
miRNA:   3'- -CGUUAa-CGCUGCG----CGGCU-----AUUGCAcg -5'
22911 3' -49.8 NC_005137.2 + 42777 0.68 0.983925
Target:  5'- --cGUUGCGaggcaGCGUGCCGAUAAacaUGCc -3'
miRNA:   3'- cguUAACGC-----UGCGCGGCUAUUgc-ACG- -5'
22911 3' -49.8 NC_005137.2 + 26308 0.68 0.98577
Target:  5'- aCAAcgGCGGCGCGCUGGacucUAacACGcGCg -3'
miRNA:   3'- cGUUaaCGCUGCGCGGCU----AU--UGCaCG- -5'
22911 3' -49.8 NC_005137.2 + 8247 0.68 0.98577
Target:  5'- cGCGAUUGCuaaccacuacACcCGCCGGguucacUAACGUGCu -3'
miRNA:   3'- -CGUUAACGc---------UGcGCGGCU------AUUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 97074 0.68 0.987288
Target:  5'- aUAcgUGCG-CGCGaaugccggcaaacCCGAcAACGUGCg -3'
miRNA:   3'- cGUuaACGCuGCGC-------------GGCUaUUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 107147 0.68 0.987449
Target:  5'- gGCGGguuggGUGACGCcgaccgucaaaaGCUGAgcGACGUGCu -3'
miRNA:   3'- -CGUUaa---CGCUGCG------------CGGCUa-UUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 128975 0.68 0.987449
Target:  5'- aGCAAauaaggcGCGACcuaaauagucuGCGCCGc-AGCGUGCa -3'
miRNA:   3'- -CGUUaa-----CGCUG-----------CGCGGCuaUUGCACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.