Results 81 - 100 of 137 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22911 | 3' | -49.8 | NC_005137.2 | + | 90688 | 0.68 | 0.980603 |
Target: 5'- -----cGCGACGCcgacuuuuauuauccGCUGGUGguGCGUGCc -3' miRNA: 3'- cguuaaCGCUGCG---------------CGGCUAU--UGCACG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 90907 | 0.66 | 0.995331 |
Target: 5'- aGCAcGUUGCGcGCGUGCuCGAUcauGAUGaGCa -3' miRNA: 3'- -CGU-UAACGC-UGCGCG-GCUA---UUGCaCG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 91234 | 0.7 | 0.949744 |
Target: 5'- aGCAGUgUGCcACGUGCCGggGAauaugacggacguCGUGCa -3' miRNA: 3'- -CGUUA-ACGcUGCGCGGCuaUU-------------GCACG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 92224 | 0.73 | 0.871888 |
Target: 5'- aGCGAa-GUGACGCGCaucaccaaCGAcAGCGUGCg -3' miRNA: 3'- -CGUUaaCGCUGCGCG--------GCUaUUGCACG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 95267 | 0.67 | 0.990345 |
Target: 5'- uGCAGaUGCacGAUGCGgaCGGUAACGaGCa -3' miRNA: 3'- -CGUUaACG--CUGCGCg-GCUAUUGCaCG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 95506 | 0.7 | 0.95018 |
Target: 5'- cGCAuc-GCuGACGUgGCCGGUGGCGacuUGCg -3' miRNA: 3'- -CGUuaaCG-CUGCG-CGGCUAUUGC---ACG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 95602 | 0.69 | 0.96885 |
Target: 5'- -uGAUggGCG-CGCGCCGAUuccaaauGCGUcGCg -3' miRNA: 3'- cgUUAa-CGCuGCGCGGCUAu------UGCA-CG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 95644 | 0.67 | 0.992688 |
Target: 5'- cCGcgUGCGccgUGCGCCGAcgGGCaaGUGCg -3' miRNA: 3'- cGUuaACGCu--GCGCGGCUa-UUG--CACG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 96421 | 0.72 | 0.89378 |
Target: 5'- cGCGcg-GCGACGCGCCcgccGCGUuGCg -3' miRNA: 3'- -CGUuaaCGCUGCGCGGcuauUGCA-CG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 97074 | 0.68 | 0.987288 |
Target: 5'- aUAcgUGCG-CGCGaaugccggcaaacCCGAcAACGUGCg -3' miRNA: 3'- cGUuaACGCuGCGC-------------GGCUaUUGCACG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 98397 | 0.67 | 0.988971 |
Target: 5'- cCGAUUGUGAauaggUGUGCCGGUGA--UGCa -3' miRNA: 3'- cGUUAACGCU-----GCGCGGCUAUUgcACG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 99611 | 0.69 | 0.965593 |
Target: 5'- aCGGUUGgUGACGCGC----AACGUGCa -3' miRNA: 3'- cGUUAAC-GCUGCGCGgcuaUUGCACG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 99813 | 0.69 | 0.974695 |
Target: 5'- aCAAggGCGACGCggGCCGGUuGCGccGUa -3' miRNA: 3'- cGUUaaCGCUGCG--CGGCUAuUGCa-CG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 99987 | 0.68 | 0.981904 |
Target: 5'- aGCAucagccCGACguagcgGCGCCGAccAGCGUGCg -3' miRNA: 3'- -CGUuaac--GCUG------CGCGGCUa-UUGCACG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 100081 | 0.71 | 0.930738 |
Target: 5'- -----cGCGGCGCGCgGc--ACGUGCu -3' miRNA: 3'- cguuaaCGCUGCGCGgCuauUGCACG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 102745 | 0.66 | 0.994554 |
Target: 5'- aGCAcgUa-GACGaCG-CGGUGGCGUGCg -3' miRNA: 3'- -CGUuaAcgCUGC-GCgGCUAUUGCACG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 103806 | 0.66 | 0.996615 |
Target: 5'- aGCAGUUgcuggugugcgGCGGCGgGuuGGUGcACG-GCa -3' miRNA: 3'- -CGUUAA-----------CGCUGCgCggCUAU-UGCaCG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 104342 | 0.68 | 0.979698 |
Target: 5'- cGCAcgUGCG-UGCGUCGu---CGUGUu -3' miRNA: 3'- -CGUuaACGCuGCGCGGCuauuGCACG- -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 104645 | 0.72 | 0.886727 |
Target: 5'- cGCuggcUGCGuuuuGCGUGCCGGUAGCGUa- -3' miRNA: 3'- -CGuua-ACGC----UGCGCGGCUAUUGCAcg -5' |
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22911 | 3' | -49.8 | NC_005137.2 | + | 104986 | 0.71 | 0.930738 |
Target: 5'- uGCAA-UGCGGCGUGU---UAAUGUGCa -3' miRNA: 3'- -CGUUaACGCUGCGCGgcuAUUGCACG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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