miRNA display CGI


Results 1 - 20 of 137 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22911 3' -49.8 NC_005137.2 + 110619 0.66 0.997138
Target:  5'- gGCGGUUagugaccccGUGuACGCGCCGGccGCGgugUGCa -3'
miRNA:   3'- -CGUUAA---------CGC-UGCGCGGCUauUGC---ACG- -5'
22911 3' -49.8 NC_005137.2 + 102745 0.66 0.994554
Target:  5'- aGCAcgUa-GACGaCG-CGGUGGCGUGCg -3'
miRNA:   3'- -CGUuaAcgCUGC-GCgGCUAUUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 15856 0.66 0.994554
Target:  5'- aGCAAguuaaaCGACagugcCGCCGGUcACGUGCc -3'
miRNA:   3'- -CGUUaac---GCUGc----GCGGCUAuUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 8463 1.15 0.004828
Target:  5'- cGCAAUUGCGACGCGCCGAUAACGUGCc -3'
miRNA:   3'- -CGUUAACGCUGCGCGGCUAUUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 81424 0.66 0.997089
Target:  5'- aGCu-UUGauGCGCaGCCcagcacuGAUAACGUGCa -3'
miRNA:   3'- -CGuuAACgcUGCG-CGG-------CUAUUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 43931 0.66 0.996615
Target:  5'- gGCAAacccGCuGGCGCGCUGGUAguaGCGUucguugGCg -3'
miRNA:   3'- -CGUUaa--CG-CUGCGCGGCUAU---UGCA------CG- -5'
22911 3' -49.8 NC_005137.2 + 26795 0.66 0.996015
Target:  5'- cGCGc-UGCGACGCGCaCGcuuguACGaGCg -3'
miRNA:   3'- -CGUuaACGCUGCGCG-GCuau--UGCaCG- -5'
22911 3' -49.8 NC_005137.2 + 41963 0.66 0.996015
Target:  5'- -----cGUGGCGCGCCG-UGACa-GCg -3'
miRNA:   3'- cguuaaCGCUGCGCGGCuAUUGcaCG- -5'
22911 3' -49.8 NC_005137.2 + 46881 0.66 0.99595
Target:  5'- gGCuggugGUGGCGCGCguggaaacgguguCGAUGuccguugcgcGCGUGCg -3'
miRNA:   3'- -CGuuaa-CGCUGCGCG-------------GCUAU----------UGCACG- -5'
22911 3' -49.8 NC_005137.2 + 111343 0.66 0.994554
Target:  5'- -aGGUUGUcguaGAUGCuGCUGGUAGCGgGCg -3'
miRNA:   3'- cgUUAACG----CUGCG-CGGCUAUUGCaCG- -5'
22911 3' -49.8 NC_005137.2 + 46321 0.66 0.995885
Target:  5'- cGCAcUUGuUGAUGCGCaCGuccgacacuuGCGUGCu -3'
miRNA:   3'- -CGUuAAC-GCUGCGCG-GCuau-------UGCACG- -5'
22911 3' -49.8 NC_005137.2 + 122535 0.66 0.996015
Target:  5'- cGCuaagGCGGCGgGCgug-GGCGUGCu -3'
miRNA:   3'- -CGuuaaCGCUGCgCGgcuaUUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 74281 0.66 0.997138
Target:  5'- uGCAAccGUGcCGUGCCGGcGcgaaagccaacACGUGCa -3'
miRNA:   3'- -CGUUaaCGCuGCGCGGCUaU-----------UGCACG- -5'
22911 3' -49.8 NC_005137.2 + 56889 0.66 0.995331
Target:  5'- cCAAUUGCGuuuCGCGCaUGAUAAgagGCg -3'
miRNA:   3'- cGUUAACGCu--GCGCG-GCUAUUgcaCG- -5'
22911 3' -49.8 NC_005137.2 + 44007 0.66 0.997138
Target:  5'- cGCGAUccGCGGCGUuUCGc--ACGUGCa -3'
miRNA:   3'- -CGUUAa-CGCUGCGcGGCuauUGCACG- -5'
22911 3' -49.8 NC_005137.2 + 84731 0.66 0.996015
Target:  5'- aGCAcgUGCccgacccgcccGaACGCGCCGA---CGUGUu -3'
miRNA:   3'- -CGUuaACG-----------C-UGCGCGGCUauuGCACG- -5'
22911 3' -49.8 NC_005137.2 + 90907 0.66 0.995331
Target:  5'- aGCAcGUUGCGcGCGUGCuCGAUcauGAUGaGCa -3'
miRNA:   3'- -CGU-UAACGC-UGCGCG-GCUA---UUGCaCG- -5'
22911 3' -49.8 NC_005137.2 + 67932 0.66 0.994554
Target:  5'- aGCAAga-CGACGUGuuGGUGAgCG-GCg -3'
miRNA:   3'- -CGUUaacGCUGCGCggCUAUU-GCaCG- -5'
22911 3' -49.8 NC_005137.2 + 129007 0.66 0.997138
Target:  5'- aCAAUUGUGcaACGCGCUaaAUGACcUGCa -3'
miRNA:   3'- cGUUAACGC--UGCGCGGc-UAUUGcACG- -5'
22911 3' -49.8 NC_005137.2 + 42586 0.66 0.996615
Target:  5'- -uGAUUGCG-CGCGgCGGacacaUnACGUGUc -3'
miRNA:   3'- cgUUAACGCuGCGCgGCU-----AuUGCACG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.