miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22911 5' -52.6 NC_005137.2 + 2496 0.7 0.833785
Target:  5'- -cGC-CGUGuuGAAGGACGUGCGG-GAu -3'
miRNA:   3'- aaCGuGCACu-UUUUCUGCGCGCCgCU- -5'
22911 5' -52.6 NC_005137.2 + 6609 0.72 0.748833
Target:  5'- cUGCGCGcUGAAAc-GACGCGCGcGCa- -3'
miRNA:   3'- aACGUGC-ACUUUuuCUGCGCGC-CGcu -5'
22911 5' -52.6 NC_005137.2 + 8500 1.06 0.006764
Target:  5'- cUUGCACGUGAAAAAGACGCGCGGCGAc -3'
miRNA:   3'- -AACGUGCACUUUUUCUGCGCGCCGCU- -5'
22911 5' -52.6 NC_005137.2 + 12864 0.68 0.915422
Target:  5'- -gGCGCaaucUGGAucacGGGCGCGgGGCGAa -3'
miRNA:   3'- aaCGUGc---ACUUuu--UCUGCGCgCCGCU- -5'
22911 5' -52.6 NC_005137.2 + 16594 0.72 0.748833
Target:  5'- gUGCGCGcauu---GAUGCGCGGCGGc -3'
miRNA:   3'- aACGUGCacuuuuuCUGCGCGCCGCU- -5'
22911 5' -52.6 NC_005137.2 + 25688 0.66 0.951542
Target:  5'- uUUGCAgacaagGUGGAuuGGGACGCGguguCGGCGAg -3'
miRNA:   3'- -AACGUg-----CACUUu-UUCUGCGC----GCCGCU- -5'
22911 5' -52.6 NC_005137.2 + 26680 0.69 0.874442
Target:  5'- -cGCACGUGcGAAcguuugauGGCGCugaacgGCGGCGAa -3'
miRNA:   3'- aaCGUGCACuUUUu-------CUGCG------CGCCGCU- -5'
22911 5' -52.6 NC_005137.2 + 30720 0.67 0.927039
Target:  5'- cUGCAUGUGGAGAuuguGGGCGUgaauGCcGCGAc -3'
miRNA:   3'- aACGUGCACUUUU----UCUGCG----CGcCGCU- -5'
22911 5' -52.6 NC_005137.2 + 31024 0.75 0.545563
Target:  5'- -gGUGCGUGcgcugcuggcgcacGAAGAGGCGCGCGGCc- -3'
miRNA:   3'- aaCGUGCAC--------------UUUUUCUGCGCGCCGcu -5'
22911 5' -52.6 NC_005137.2 + 31370 0.66 0.959568
Target:  5'- cUGCaauGCGUGAccaGAAAGGaguugcuugGCGCGGCGc -3'
miRNA:   3'- aACG---UGCACU---UUUUCUg--------CGCGCCGCu -5'
22911 5' -52.6 NC_005137.2 + 33200 0.68 0.896059
Target:  5'- aUUGCGCGUcGAAGAG-CGCaccGCGGuCGAg -3'
miRNA:   3'- -AACGUGCAcUUUUUCuGCG---CGCC-GCU- -5'
22911 5' -52.6 NC_005137.2 + 42057 0.66 0.959568
Target:  5'- --uCACG-GAGAuuGGCGCG-GGCGAa -3'
miRNA:   3'- aacGUGCaCUUUuuCUGCGCgCCGCU- -5'
22911 5' -52.6 NC_005137.2 + 44107 0.68 0.902768
Target:  5'- cUGCugGUGcu--GGACGCGUGGg-- -3'
miRNA:   3'- aACGugCACuuuuUCUGCGCGCCgcu -5'
22911 5' -52.6 NC_005137.2 + 53048 0.68 0.902768
Target:  5'- -gGCAaacacCGUGAAuAAGGUGCGCGGUGu -3'
miRNA:   3'- aaCGU-----GCACUUuUUCUGCGCGCCGCu -5'
22911 5' -52.6 NC_005137.2 + 70217 0.68 0.909224
Target:  5'- gUGUugGUGAAggcgucgguGAAGGCGU-CGGUGAa -3'
miRNA:   3'- aACGugCACUU---------UUUCUGCGcGCCGCU- -5'
22911 5' -52.6 NC_005137.2 + 72292 0.72 0.718136
Target:  5'- uUUGCACGUGugccuAAuuGACGCcaacGCGGCGc -3'
miRNA:   3'- -AACGUGCACu----UUuuCUGCG----CGCCGCu -5'
22911 5' -52.6 NC_005137.2 + 84292 0.74 0.60893
Target:  5'- -cGCGCGUGGAAAcGGugucgauguccguuGCGCGCGuGCGAg -3'
miRNA:   3'- aaCGUGCACUUUU-UC--------------UGCGCGC-CGCU- -5'
22911 5' -52.6 NC_005137.2 + 87171 0.7 0.833785
Target:  5'- -cGCACGUGcAAAucgcguucgacGGGCGCG-GGCGGc -3'
miRNA:   3'- aaCGUGCACuUUU-----------UCUGCGCgCCGCU- -5'
22911 5' -52.6 NC_005137.2 + 97975 0.67 0.947155
Target:  5'- aUUGUAgGcaAAAcGGGCGCGCGGCGu -3'
miRNA:   3'- -AACGUgCacUUUuUCUGCGCGCCGCu -5'
22911 5' -52.6 NC_005137.2 + 100034 0.69 0.850703
Target:  5'- -aGCACGcGGuccgacgcGGCGCGCGGCGc -3'
miRNA:   3'- aaCGUGCaCUuuuu----CUGCGCGCCGCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.