Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22912 | 5' | -55.8 | NC_005137.2 | + | 102760 | 0.7 | 0.626467 |
Target: 5'- aAGGCACGUgCGGUGCGUGUugggcguucgcuACCUUGg -3' miRNA: 3'- -UUCGUGCGgGUCGUGCGCAu-----------UGGAAC- -5' |
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22912 | 5' | -55.8 | NC_005137.2 | + | 67670 | 0.72 | 0.494616 |
Target: 5'- uAAGCguGCGuUCCAGCGCGCGUGuguuGCCUUc -3' miRNA: 3'- -UUCG--UGC-GGGUCGUGCGCAU----UGGAAc -5' |
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22912 | 5' | -55.8 | NC_005137.2 | + | 119580 | 0.66 | 0.868284 |
Target: 5'- -cGCACGCUgAGCACGUGccACaCUUc -3' miRNA: 3'- uuCGUGCGGgUCGUGCGCauUG-GAAc -5' |
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22912 | 5' | -55.8 | NC_005137.2 | + | 65264 | 0.66 | 0.860523 |
Target: 5'- cAGCGaGCCCGGCGgCGacgGUGACCaUUGg -3' miRNA: 3'- uUCGUgCGGGUCGU-GCg--CAUUGG-AAC- -5' |
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22912 | 5' | -55.8 | NC_005137.2 | + | 34004 | 0.66 | 0.852543 |
Target: 5'- -uGCACGCUUAGCAC-CGU-GCCg-- -3' miRNA: 3'- uuCGUGCGGGUCGUGcGCAuUGGaac -5' |
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22912 | 5' | -55.8 | NC_005137.2 | + | 87083 | 0.66 | 0.835955 |
Target: 5'- aAGGCaugaACGCCguGCACGCG--GCCg-- -3' miRNA: 3'- -UUCG----UGCGGguCGUGCGCauUGGaac -5' |
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22912 | 5' | -55.8 | NC_005137.2 | + | 82867 | 0.66 | 0.835955 |
Target: 5'- gGAGUuaaACGCCgCAGaaaACGCGUGccGCCUUu -3' miRNA: 3'- -UUCG---UGCGG-GUCg--UGCGCAU--UGGAAc -5' |
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22912 | 5' | -55.8 | NC_005137.2 | + | 100057 | 0.67 | 0.827363 |
Target: 5'- cGGCGCGUUCAGCAUGCuuuguGCCg-- -3' miRNA: 3'- uUCGUGCGGGUCGUGCGcau--UGGaac -5' |
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22912 | 5' | -55.8 | NC_005137.2 | + | 127531 | 0.67 | 0.809622 |
Target: 5'- -uGCGCGCCCAuGCcUGa-UGACCUUGa -3' miRNA: 3'- uuCGUGCGGGU-CGuGCgcAUUGGAAC- -5' |
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22912 | 5' | -55.8 | NC_005137.2 | + | 122731 | 0.67 | 0.809622 |
Target: 5'- uGGGCGUGCUUAGCACGUuaGUGACCc-- -3' miRNA: 3'- -UUCGUGCGGGUCGUGCG--CAUUGGaac -5' |
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22912 | 5' | -55.8 | NC_005137.2 | + | 90393 | 0.67 | 0.80049 |
Target: 5'- aGAGCGCGUCCAcGUugGuCGUcGCCa-- -3' miRNA: 3'- -UUCGUGCGGGU-CGugC-GCAuUGGaac -5' |
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22912 | 5' | -55.8 | NC_005137.2 | + | 83121 | 0.67 | 0.781753 |
Target: 5'- uGGCACGCCCAacGCuaACGCGUuuguuAAUCUg- -3' miRNA: 3'- uUCGUGCGGGU--CG--UGCGCA-----UUGGAac -5' |
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22912 | 5' | -55.8 | NC_005137.2 | + | 104707 | 0.68 | 0.772166 |
Target: 5'- cAGCGCGCCgCcguuGUACGCGUAcgCUUGa -3' miRNA: 3'- uUCGUGCGG-Gu---CGUGCGCAUugGAAC- -5' |
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22912 | 5' | -55.8 | NC_005137.2 | + | 122378 | 0.68 | 0.722443 |
Target: 5'- uAGCACGCCCAcGCcCGCc--GCCUUa -3' miRNA: 3'- uUCGUGCGGGU-CGuGCGcauUGGAAc -5' |
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22912 | 5' | -55.8 | NC_005137.2 | + | 8289 | 1.06 | 0.002947 |
Target: 5'- uAAGCACGCCCAGCACGCGUAACCUUGg -3' miRNA: 3'- -UUCGUGCGGGUCGUGCGCAUUGGAAC- -5' |
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22912 | 5' | -55.8 | NC_005137.2 | + | 88534 | 0.77 | 0.283536 |
Target: 5'- cGGGUucaGCGCCCAGUugGCGUAGCUa-- -3' miRNA: 3'- -UUCG---UGCGGGUCGugCGCAUUGGaac -5' |
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22912 | 5' | -55.8 | NC_005137.2 | + | 102954 | 0.71 | 0.597008 |
Target: 5'- uGGCGCauCCCAGCGCGCGUcgcGCCa-- -3' miRNA: 3'- uUCGUGc-GGGUCGUGCGCAu--UGGaac -5' |
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22912 | 5' | -55.8 | NC_005137.2 | + | 66880 | 0.7 | 0.628575 |
Target: 5'- -cGCACGUCauaAGCACGCGgucaaaGACCUg- -3' miRNA: 3'- uuCGUGCGGg--UCGUGCGCa-----UUGGAac -5' |
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22912 | 5' | -55.8 | NC_005137.2 | + | 50424 | 0.7 | 0.653857 |
Target: 5'- aAAGCAUGCCUAGCAacuauuugcuaaacaUGCGcGGCCUa- -3' miRNA: 3'- -UUCGUGCGGGUCGU---------------GCGCaUUGGAac -5' |
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22912 | 5' | -55.8 | NC_005137.2 | + | 96133 | 0.69 | 0.681123 |
Target: 5'- cGGUACGCCCAugcGCAuCGCGUuGCCc-- -3' miRNA: 3'- uUCGUGCGGGU---CGU-GCGCAuUGGaac -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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