miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22912 5' -55.8 NC_005137.2 + 8289 1.06 0.002947
Target:  5'- uAAGCACGCCCAGCACGCGUAACCUUGg -3'
miRNA:   3'- -UUCGUGCGGGUCGUGCGCAUUGGAAC- -5'
22912 5' -55.8 NC_005137.2 + 88534 0.77 0.283536
Target:  5'- cGGGUucaGCGCCCAGUugGCGUAGCUa-- -3'
miRNA:   3'- -UUCG---UGCGGGUCGugCGCAUUGGaac -5'
22912 5' -55.8 NC_005137.2 + 67670 0.72 0.494616
Target:  5'- uAAGCguGCGuUCCAGCGCGCGUGuguuGCCUUc -3'
miRNA:   3'- -UUCG--UGC-GGGUCGUGCGCAU----UGGAAc -5'
22912 5' -55.8 NC_005137.2 + 102954 0.71 0.597008
Target:  5'- uGGCGCauCCCAGCGCGCGUcgcGCCa-- -3'
miRNA:   3'- uUCGUGc-GGGUCGUGCGCAu--UGGaac -5'
22912 5' -55.8 NC_005137.2 + 102760 0.7 0.626467
Target:  5'- aAGGCACGUgCGGUGCGUGUugggcguucgcuACCUUGg -3'
miRNA:   3'- -UUCGUGCGgGUCGUGCGCAu-----------UGGAAC- -5'
22912 5' -55.8 NC_005137.2 + 66880 0.7 0.628575
Target:  5'- -cGCACGUCauaAGCACGCGgucaaaGACCUg- -3'
miRNA:   3'- uuCGUGCGGg--UCGUGCGCa-----UUGGAac -5'
22912 5' -55.8 NC_005137.2 + 50424 0.7 0.653857
Target:  5'- aAAGCAUGCCUAGCAacuauuugcuaaacaUGCGcGGCCUa- -3'
miRNA:   3'- -UUCGUGCGGGUCGU---------------GCGCaUUGGAac -5'
22912 5' -55.8 NC_005137.2 + 96133 0.69 0.681123
Target:  5'- cGGUACGCCCAugcGCAuCGCGUuGCCc-- -3'
miRNA:   3'- uUCGUGCGGGU---CGU-GCGCAuUGGaac -5'
22912 5' -55.8 NC_005137.2 + 2374 0.69 0.712212
Target:  5'- uGGUACGCCguGgGCGUGcUAACCUa- -3'
miRNA:   3'- uUCGUGCGGguCgUGCGC-AUUGGAac -5'
22912 5' -55.8 NC_005137.2 + 122378 0.68 0.722443
Target:  5'- uAGCACGCCCAcGCcCGCc--GCCUUa -3'
miRNA:   3'- uUCGUGCGGGU-CGuGCGcauUGGAAc -5'
22912 5' -55.8 NC_005137.2 + 25157 0.68 0.772166
Target:  5'- -cGCACGCCUccgugucuggAGCACGCGgagguucuGCCg-- -3'
miRNA:   3'- uuCGUGCGGG----------UCGUGCGCau------UGGaac -5'
22912 5' -55.8 NC_005137.2 + 104707 0.68 0.772166
Target:  5'- cAGCGCGCCgCcguuGUACGCGUAcgCUUGa -3'
miRNA:   3'- uUCGUGCGG-Gu---CGUGCGCAUugGAAC- -5'
22912 5' -55.8 NC_005137.2 + 83121 0.67 0.781753
Target:  5'- uGGCACGCCCAacGCuaACGCGUuuguuAAUCUg- -3'
miRNA:   3'- uUCGUGCGGGU--CG--UGCGCA-----UUGGAac -5'
22912 5' -55.8 NC_005137.2 + 30862 0.67 0.791198
Target:  5'- cGGCGCGCCC-GUACGUGggcgAGCUg-- -3'
miRNA:   3'- uUCGUGCGGGuCGUGCGCa---UUGGaac -5'
22912 5' -55.8 NC_005137.2 + 90393 0.67 0.80049
Target:  5'- aGAGCGCGUCCAcGUugGuCGUcGCCa-- -3'
miRNA:   3'- -UUCGUGCGGGU-CGugC-GCAuUGGaac -5'
22912 5' -55.8 NC_005137.2 + 18122 0.67 0.80049
Target:  5'- cGGGUACGCgCAGCcCGCGUGcuaucaCUUGg -3'
miRNA:   3'- -UUCGUGCGgGUCGuGCGCAUug----GAAC- -5'
22912 5' -55.8 NC_005137.2 + 127531 0.67 0.809622
Target:  5'- -uGCGCGCCCAuGCcUGa-UGACCUUGa -3'
miRNA:   3'- uuCGUGCGGGU-CGuGCgcAUUGGAAC- -5'
22912 5' -55.8 NC_005137.2 + 122731 0.67 0.809622
Target:  5'- uGGGCGUGCUUAGCACGUuaGUGACCc-- -3'
miRNA:   3'- -UUCGUGCGGGUCGUGCG--CAUUGGaac -5'
22912 5' -55.8 NC_005137.2 + 42234 0.67 0.809622
Target:  5'- uGGaCAUGCgCgAGCACGCGUuGCCUc- -3'
miRNA:   3'- uUC-GUGCG-GgUCGUGCGCAuUGGAac -5'
22912 5' -55.8 NC_005137.2 + 100057 0.67 0.827363
Target:  5'- cGGCGCGUUCAGCAUGCuuuguGCCg-- -3'
miRNA:   3'- uUCGUGCGGGUCGUGCGcau--UGGaac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.