Results 41 - 47 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22914 | 5' | -49.2 | NC_005137.2 | + | 90505 | 0.67 | 0.990276 |
Target: 5'- aAGCGgGCACAAUggaccaugauuuggUUAGCGuuGgcGAg -3' miRNA: 3'- -UUGCgCGUGUUAa-------------AAUCGCggCuaCU- -5' |
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22914 | 5' | -49.2 | NC_005137.2 | + | 117190 | 0.67 | 0.991058 |
Target: 5'- uACGaCGCACAAUUUcc-CGCCGAUu- -3' miRNA: 3'- uUGC-GCGUGUUAAAaucGCGGCUAcu -5' |
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22914 | 5' | -49.2 | NC_005137.2 | + | 130950 | 0.67 | 0.991908 |
Target: 5'- cGACGCGCGCGcUUUUAuacaagcgguugacGCGcCCGAaGAc -3' miRNA: 3'- -UUGCGCGUGUuAAAAU--------------CGC-GGCUaCU- -5' |
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22914 | 5' | -49.2 | NC_005137.2 | + | 44037 | 0.66 | 0.993314 |
Target: 5'- uGCGCGCACGGUUUUGccuGUGCUa---- -3' miRNA: 3'- uUGCGCGUGUUAAAAU---CGCGGcuacu -5' |
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22914 | 5' | -49.2 | NC_005137.2 | + | 128665 | 0.66 | 0.99509 |
Target: 5'- gAACGCGCGUAAUUgu-GaCGCCGAa-- -3' miRNA: 3'- -UUGCGCGUGUUAAaauC-GCGGCUacu -5' |
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22914 | 5' | -49.2 | NC_005137.2 | + | 2473 | 0.66 | 0.995822 |
Target: 5'- -uCGCGCGCuAUUUauGCGCCGcGUGc -3' miRNA: 3'- uuGCGCGUGuUAAAauCGCGGC-UACu -5' |
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22914 | 5' | -49.2 | NC_005137.2 | + | 98365 | 0.66 | 0.995822 |
Target: 5'- -uUGUGCGCcggUUUGGCGCCGucgcGAc -3' miRNA: 3'- uuGCGCGUGuuaAAAUCGCGGCua--CU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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