miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22916 5' -53.6 NC_005137.2 + 4319 1.09 0.003925
Target:  5'- aUGCACGCCGAUUAACAUGCCCGGACAc -3'
miRNA:   3'- -ACGUGCGGCUAAUUGUACGGGCCUGU- -5'
22916 5' -53.6 NC_005137.2 + 88373 0.78 0.35352
Target:  5'- aGCGUGCCGAUaAACAUGCCC-GACAa -3'
miRNA:   3'- aCGUGCGGCUAaUUGUACGGGcCUGU- -5'
22916 5' -53.6 NC_005137.2 + 122690 0.75 0.508695
Target:  5'- cGaCGCGCCGA-UAACGUGCCCGauGCAg -3'
miRNA:   3'- aC-GUGCGGCUaAUUGUACGGGCc-UGU- -5'
22916 5' -53.6 NC_005137.2 + 106432 0.73 0.641683
Target:  5'- --gGCGCCGuggggcaucGCGUGCCUGGACAa -3'
miRNA:   3'- acgUGCGGCuaau-----UGUACGGGCCUGU- -5'
22916 5' -53.6 NC_005137.2 + 110642 0.72 0.706628
Target:  5'- -aCGCGCCGAcggcguUUGGCuuGUGCCCGuGACGg -3'
miRNA:   3'- acGUGCGGCU------AAUUG--UACGGGC-CUGU- -5'
22916 5' -53.6 NC_005137.2 + 59950 0.72 0.706628
Target:  5'- gGCGCGCCucguuGAUgcGCAUGCCCGuACc -3'
miRNA:   3'- aCGUGCGG-----CUAauUGUACGGGCcUGu -5'
22916 5' -53.6 NC_005137.2 + 95490 0.72 0.70766
Target:  5'- aUGCGCGCCGcacgggcgcaucgcUGACGUGgCCGGugGc -3'
miRNA:   3'- -ACGUGCGGCua------------AUUGUACgGGCCugU- -5'
22916 5' -53.6 NC_005137.2 + 95654 0.71 0.757226
Target:  5'- cGUGCGCCGAcgGGCAagugcGCCUGGAUc -3'
miRNA:   3'- aCGUGCGGCUaaUUGUa----CGGGCCUGu -5'
22916 5' -53.6 NC_005137.2 + 130955 0.7 0.767034
Target:  5'- cGCGCGCuuuuauacaagCGGUUGACGcGCCCGaaGACAu -3'
miRNA:   3'- aCGUGCG-----------GCUAAUUGUaCGGGC--CUGU- -5'
22916 5' -53.6 NC_005137.2 + 119580 0.7 0.803969
Target:  5'- cGCACGCUGAgc-ACGUGCcacacuuCCGGAaCAa -3'
miRNA:   3'- aCGUGCGGCUaauUGUACG-------GGCCU-GU- -5'
22916 5' -53.6 NC_005137.2 + 108116 0.69 0.822849
Target:  5'- uUGCGCGCCGAUcgcagcaccGCAU-CCCGGuCGu -3'
miRNA:   3'- -ACGUGCGGCUAau-------UGUAcGGGCCuGU- -5'
22916 5' -53.6 NC_005137.2 + 100407 0.69 0.831559
Target:  5'- cGCGCGCCcGUgcguuGCGgcGCCCGGAUc -3'
miRNA:   3'- aCGUGCGGcUAau---UGUa-CGGGCCUGu -5'
22916 5' -53.6 NC_005137.2 + 52020 0.69 0.840075
Target:  5'- uUGuCGCGCCGGgcgUAaaagGCGUGCacaUGGACAa -3'
miRNA:   3'- -AC-GUGCGGCUa--AU----UGUACGg--GCCUGU- -5'
22916 5' -53.6 NC_005137.2 + 97373 0.69 0.843426
Target:  5'- aGCAUGCUGcgcGACAUGCuguacgacgacagcaCCGGGCAg -3'
miRNA:   3'- aCGUGCGGCuaaUUGUACG---------------GGCCUGU- -5'
22916 5' -53.6 NC_005137.2 + 96663 0.69 0.856496
Target:  5'- uUGCGCGCCGcuaguCAUagcGCCCguGGACAc -3'
miRNA:   3'- -ACGUGCGGCuaauuGUA---CGGG--CCUGU- -5'
22916 5' -53.6 NC_005137.2 + 95776 0.68 0.862042
Target:  5'- cGCACGUCGG--GACGUuugauuagccacacGaCCCGGACGg -3'
miRNA:   3'- aCGUGCGGCUaaUUGUA--------------C-GGGCCUGU- -5'
22916 5' -53.6 NC_005137.2 + 76658 0.68 0.864386
Target:  5'- gUGCACGCCGuugAAUAgacGCCCGuGuCAu -3'
miRNA:   3'- -ACGUGCGGCuaaUUGUa--CGGGC-CuGU- -5'
22916 5' -53.6 NC_005137.2 + 115289 0.68 0.872053
Target:  5'- gUGC-CGCCGGUc-ACGUGCCgcccgaauuUGGACAc -3'
miRNA:   3'- -ACGuGCGGCUAauUGUACGG---------GCCUGU- -5'
22916 5' -53.6 NC_005137.2 + 56669 0.68 0.872053
Target:  5'- gUGCuuGCCGAcggcgcugugGACGUGaCCGGACGc -3'
miRNA:   3'- -ACGugCGGCUaa--------UUGUACgGGCCUGU- -5'
22916 5' -53.6 NC_005137.2 + 99596 0.68 0.879491
Target:  5'- aGCcCGCCGGU----GUGCCUGGugGc -3'
miRNA:   3'- aCGuGCGGCUAauugUACGGGCCugU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.