Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
22916 | 5' | -53.6 | NC_005137.2 | + | 4319 | 1.09 | 0.003925 |
Target: 5'- aUGCACGCCGAUUAACAUGCCCGGACAc -3' miRNA: 3'- -ACGUGCGGCUAAUUGUACGGGCCUGU- -5' |
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22916 | 5' | -53.6 | NC_005137.2 | + | 64157 | 0.66 | 0.945083 |
Target: 5'- cGCAC-CCGugcgcguUUAACG-GCgCCGGACAc -3' miRNA: 3'- aCGUGcGGCu------AAUUGUaCG-GGCCUGU- -5' |
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22916 | 5' | -53.6 | NC_005137.2 | + | 61415 | 0.66 | 0.945083 |
Target: 5'- --aACGCCGcgUucucaAACAUGUCgGGACGu -3' miRNA: 3'- acgUGCGGCuaA-----UUGUACGGgCCUGU- -5' |
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22916 | 5' | -53.6 | NC_005137.2 | + | 114239 | 0.66 | 0.940382 |
Target: 5'- uUGCACGCCGu---GCAauagCCGGACu -3' miRNA: 3'- -ACGUGCGGCuaauUGUacg-GGCCUGu -5' |
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22916 | 5' | -53.6 | NC_005137.2 | + | 75232 | 0.67 | 0.92476 |
Target: 5'- cUGCugGCCGAaaugaUGGcCGUGaCCgCGGGCGc -3' miRNA: 3'- -ACGugCGGCUa----AUU-GUAC-GG-GCCUGU- -5' |
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22916 | 5' | -53.6 | NC_005137.2 | + | 7623 | 0.67 | 0.92476 |
Target: 5'- aUGCAuuucagaguuuCGCCGGccAGCGUGCCCaGAUu -3' miRNA: 3'- -ACGU-----------GCGGCUaaUUGUACGGGcCUGu -5' |
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22916 | 5' | -53.6 | NC_005137.2 | + | 29515 | 0.67 | 0.913074 |
Target: 5'- aGCACGCCaGUUuuuguGgGUGCgCCGcGACAa -3' miRNA: 3'- aCGUGCGGcUAAu----UgUACG-GGC-CUGU- -5' |
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22916 | 5' | -53.6 | NC_005137.2 | + | 110727 | 0.67 | 0.900379 |
Target: 5'- gUGCGCGCaGAgcgcuUGUGCgCCGGGCGa -3' miRNA: 3'- -ACGUGCGgCUaauu-GUACG-GGCCUGU- -5' |
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22916 | 5' | -53.6 | NC_005137.2 | + | 56669 | 0.68 | 0.872053 |
Target: 5'- gUGCuuGCCGAcggcgcugugGACGUGaCCGGACGc -3' miRNA: 3'- -ACGugCGGCUaa--------UUGUACgGGCCUGU- -5' |
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22916 | 5' | -53.6 | NC_005137.2 | + | 95776 | 0.68 | 0.862042 |
Target: 5'- cGCACGUCGG--GACGUuugauuagccacacGaCCCGGACGg -3' miRNA: 3'- aCGUGCGGCUaaUUGUA--------------C-GGGCCUGU- -5' |
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22916 | 5' | -53.6 | NC_005137.2 | + | 59950 | 0.72 | 0.706628 |
Target: 5'- gGCGCGCCucguuGAUgcGCAUGCCCGuACc -3' miRNA: 3'- aCGUGCGG-----CUAauUGUACGGGCcUGu -5' |
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22916 | 5' | -53.6 | NC_005137.2 | + | 110642 | 0.72 | 0.706628 |
Target: 5'- -aCGCGCCGAcggcguUUGGCuuGUGCCCGuGACGg -3' miRNA: 3'- acGUGCGGCU------AAUUG--UACGGGC-CUGU- -5' |
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22916 | 5' | -53.6 | NC_005137.2 | + | 95490 | 0.72 | 0.70766 |
Target: 5'- aUGCGCGCCGcacgggcgcaucgcUGACGUGgCCGGugGc -3' miRNA: 3'- -ACGUGCGGCua------------AUUGUACgGGCCugU- -5' |
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22916 | 5' | -53.6 | NC_005137.2 | + | 95654 | 0.71 | 0.757226 |
Target: 5'- cGUGCGCCGAcgGGCAagugcGCCUGGAUc -3' miRNA: 3'- aCGUGCGGCUaaUUGUa----CGGGCCUGu -5' |
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22916 | 5' | -53.6 | NC_005137.2 | + | 130955 | 0.7 | 0.767034 |
Target: 5'- cGCGCGCuuuuauacaagCGGUUGACGcGCCCGaaGACAu -3' miRNA: 3'- aCGUGCG-----------GCUAAUUGUaCGGGC--CUGU- -5' |
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22916 | 5' | -53.6 | NC_005137.2 | + | 119580 | 0.7 | 0.803969 |
Target: 5'- cGCACGCUGAgc-ACGUGCcacacuuCCGGAaCAa -3' miRNA: 3'- aCGUGCGGCUaauUGUACG-------GGCCU-GU- -5' |
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22916 | 5' | -53.6 | NC_005137.2 | + | 108116 | 0.69 | 0.822849 |
Target: 5'- uUGCGCGCCGAUcgcagcaccGCAU-CCCGGuCGu -3' miRNA: 3'- -ACGUGCGGCUAau-------UGUAcGGGCCuGU- -5' |
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22916 | 5' | -53.6 | NC_005137.2 | + | 88373 | 0.78 | 0.35352 |
Target: 5'- aGCGUGCCGAUaAACAUGCCC-GACAa -3' miRNA: 3'- aCGUGCGGCUAaUUGUACGGGcCUGU- -5' |
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22916 | 5' | -53.6 | NC_005137.2 | + | 74870 | 0.66 | 0.930222 |
Target: 5'- cUGCGaagUGCCGcugGACGUGUUgGGACAa -3' miRNA: 3'- -ACGU---GCGGCuaaUUGUACGGgCCUGU- -5' |
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22916 | 5' | -53.6 | NC_005137.2 | + | 7476 | 0.67 | 0.919044 |
Target: 5'- gGgGCGCCagcacuUUGACcgcauccUGCCCGGGCAa -3' miRNA: 3'- aCgUGCGGcu----AAUUGu------ACGGGCCUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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