miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22917 3' -46.3 NC_005137.2 + 130010 0.67 0.99968
Target:  5'- ---aCAAAcgUGgGCUGAggugaAGGCGGCGCu -3'
miRNA:   3'- cauaGUUUa-ACgUGGCU-----UCCGUUGCG- -5'
22917 3' -46.3 NC_005137.2 + 109540 0.67 0.999594
Target:  5'- gGUGUCAGGcUGCAgugugaCGguGGCGACGg -3'
miRNA:   3'- -CAUAGUUUaACGUg-----GCuuCCGUUGCg -5'
22917 3' -46.3 NC_005137.2 + 98357 0.67 0.999594
Target:  5'- -cGUCAcgcuugUGCGCCGGuuuGGCGccguCGCg -3'
miRNA:   3'- caUAGUuua---ACGUGGCUu--CCGUu---GCG- -5'
22917 3' -46.3 NC_005137.2 + 117570 0.67 0.999532
Target:  5'- ---gCAAAgUGCGCCGccggugcggcugacGGGCGACGUg -3'
miRNA:   3'- cauaGUUUaACGUGGCu-------------UCCGUUGCG- -5'
22917 3' -46.3 NC_005137.2 + 35122 0.67 0.999487
Target:  5'- -gGUCAA----CACCGAAGGUuugacACGCg -3'
miRNA:   3'- caUAGUUuaacGUGGCUUCCGu----UGCG- -5'
22917 3' -46.3 NC_005137.2 + 72515 0.67 0.999487
Target:  5'- cGUGUacacUAGcgUGCACgCGGA-GCGGCGCa -3'
miRNA:   3'- -CAUA----GUUuaACGUG-GCUUcCGUUGCG- -5'
22917 3' -46.3 NC_005137.2 + 130482 0.67 0.999357
Target:  5'- -gGUCAAAcaacgcGCugCGAucGGUAGCGCc -3'
miRNA:   3'- caUAGUUUaa----CGugGCUu-CCGUUGCG- -5'
22917 3' -46.3 NC_005137.2 + 35559 0.67 0.999357
Target:  5'- uUGUCAAGacacGCACCGccGGCGccauuuugauaaACGCu -3'
miRNA:   3'- cAUAGUUUaa--CGUGGCuuCCGU------------UGCG- -5'
22917 3' -46.3 NC_005137.2 + 62382 0.67 0.999357
Target:  5'- ---aCAAuggUGCAgCGGAcagaucgcGGCAGCGCa -3'
miRNA:   3'- cauaGUUua-ACGUgGCUU--------CCGUUGCG- -5'
22917 3' -46.3 NC_005137.2 + 46647 0.68 0.9992
Target:  5'- ---aCAGcg-GCGCUaAGGGCAGCGCc -3'
miRNA:   3'- cauaGUUuaaCGUGGcUUCCGUUGCG- -5'
22917 3' -46.3 NC_005137.2 + 52620 0.68 0.9992
Target:  5'- --uUCAccguaaaacGGUUGCGgCGGAGGCGcuugaaacggaaGCGCg -3'
miRNA:   3'- cauAGU---------UUAACGUgGCUUCCGU------------UGCG- -5'
22917 3' -46.3 NC_005137.2 + 113159 0.68 0.9992
Target:  5'- -aGUCAAGUUGgcauuuaGCCGucGGgGAUGCg -3'
miRNA:   3'- caUAGUUUAACg------UGGCuuCCgUUGCG- -5'
22917 3' -46.3 NC_005137.2 + 63885 0.68 0.99901
Target:  5'- -aAUCAAAacgaaaaUGCugCG--GGCAACGCa -3'
miRNA:   3'- caUAGUUUa------ACGugGCuuCCGUUGCG- -5'
22917 3' -46.3 NC_005137.2 + 71363 0.68 0.99901
Target:  5'- -cGUCGGccgcGUUG-ACUGucGGCGACGCg -3'
miRNA:   3'- caUAGUU----UAACgUGGCuuCCGUUGCG- -5'
22917 3' -46.3 NC_005137.2 + 95484 0.68 0.998783
Target:  5'- -gGUCGGAUgcGCGCCGcacGGGCGcauCGCu -3'
miRNA:   3'- caUAGUUUAa-CGUGGCu--UCCGUu--GCG- -5'
22917 3' -46.3 NC_005137.2 + 111287 0.68 0.998783
Target:  5'- uUGUCAAGUU-CGCCGAGuuGGUcggugAGCGCu -3'
miRNA:   3'- cAUAGUUUAAcGUGGCUU--CCG-----UUGCG- -5'
22917 3' -46.3 NC_005137.2 + 32512 0.68 0.998783
Target:  5'- -cAUCGGGUUGUGCUGGaugAGGCucACGUc -3'
miRNA:   3'- caUAGUUUAACGUGGCU---UCCGu-UGCG- -5'
22917 3' -46.3 NC_005137.2 + 34600 0.68 0.998513
Target:  5'- uGUAUCAAA--GCACCGAAuuGGCgGACa- -3'
miRNA:   3'- -CAUAGUUUaaCGUGGCUU--CCG-UUGcg -5'
22917 3' -46.3 NC_005137.2 + 68471 0.68 0.998513
Target:  5'- -cGUCGAccGUUGCgacaacacGCCGggGGauacaAGCGCc -3'
miRNA:   3'- caUAGUU--UAACG--------UGGCuuCCg----UUGCG- -5'
22917 3' -46.3 NC_005137.2 + 96396 0.68 0.998392
Target:  5'- aUAUgGAGccGCGCCGAccgcuacccgcgcGGCGACGCg -3'
miRNA:   3'- cAUAgUUUaaCGUGGCUu------------CCGUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.