miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22917 5' -53.8 NC_005137.2 + 131047 0.71 0.727139
Target:  5'- uGUACGUAAaa-CUGCGGCGCGUccgcGGCg -3'
miRNA:   3'- -CGUGCAUUacgGACGCCGCGUA----CUGa -5'
22917 5' -53.8 NC_005137.2 + 129992 0.73 0.612119
Target:  5'- gGUACGU--UGUCUcGCGGCGCGgcUGACg -3'
miRNA:   3'- -CGUGCAuuACGGA-CGCCGCGU--ACUGa -5'
22917 5' -53.8 NC_005137.2 + 120104 0.66 0.930222
Target:  5'- -aGCGU--UGCUUGC-GCGUGUGGCUg -3'
miRNA:   3'- cgUGCAuuACGGACGcCGCGUACUGA- -5'
22917 5' -53.8 NC_005137.2 + 106280 0.67 0.893658
Target:  5'- gGCACGcGAUGCCccaCGGCGCcaAUGuCUg -3'
miRNA:   3'- -CGUGCaUUACGGac-GCCGCG--UACuGA- -5'
22917 5' -53.8 NC_005137.2 + 104689 0.67 0.919044
Target:  5'- -aACGUGG-GCC-GCGGCGUGUGGgUg -3'
miRNA:   3'- cgUGCAUUaCGGaCGCCGCGUACUgA- -5'
22917 5' -53.8 NC_005137.2 + 104616 0.68 0.856496
Target:  5'- aCACGUGcaacaagucGUGgCgCUGCGGCGUGUcGACUg -3'
miRNA:   3'- cGUGCAU---------UAC-G-GACGCCGCGUA-CUGA- -5'
22917 5' -53.8 NC_005137.2 + 101159 0.68 0.863607
Target:  5'- cCAUGUAcgGCC-GCGGUuggacagGCGUGGCa -3'
miRNA:   3'- cGUGCAUuaCGGaCGCCG-------CGUACUGa -5'
22917 5' -53.8 NC_005137.2 + 100407 0.68 0.886695
Target:  5'- cGCGCGcccGUGCgUUGCGGCGCccgGAUc -3'
miRNA:   3'- -CGUGCau-UACG-GACGCCGCGua-CUGa -5'
22917 5' -53.8 NC_005137.2 + 100141 0.66 0.935428
Target:  5'- gGUugGUGcGUGCgCUGCuGGCGCAcGAa- -3'
miRNA:   3'- -CGugCAU-UACG-GACG-CCGCGUaCUga -5'
22917 5' -53.8 NC_005137.2 + 100058 0.73 0.620561
Target:  5'- gGCGCGUucagcaugcuuuGUGCC-GCGGCGCGcGGCa -3'
miRNA:   3'- -CGUGCAu-----------UACGGaCGCCGCGUaCUGa -5'
22917 5' -53.8 NC_005137.2 + 96493 0.68 0.886695
Target:  5'- uGCGCGUcGUGUCcacgGGCGCuAUGACUa -3'
miRNA:   3'- -CGUGCAuUACGGacg-CCGCG-UACUGA- -5'
22917 5' -53.8 NC_005137.2 + 95333 0.66 0.935428
Target:  5'- cGUGCGUAGUGCa--CGGCGUcaaugugcgGUGGCa -3'
miRNA:   3'- -CGUGCAUUACGgacGCCGCG---------UACUGa -5'
22917 5' -53.8 NC_005137.2 + 78065 0.66 0.935428
Target:  5'- uGCAgGUGgguGUGUUUGCGGuUGCAcGACg -3'
miRNA:   3'- -CGUgCAU---UACGGACGCC-GCGUaCUGa -5'
22917 5' -53.8 NC_005137.2 + 75977 0.67 0.913074
Target:  5'- cGCGCGuUGGUGCa--CGGCGCAcgGGCc -3'
miRNA:   3'- -CGUGC-AUUACGgacGCCGCGUa-CUGa -5'
22917 5' -53.8 NC_005137.2 + 72294 0.68 0.863607
Target:  5'- uGCACGU-GUGCCUaauugacgccaacGCGGCGCc--ACUg -3'
miRNA:   3'- -CGUGCAuUACGGA-------------CGCCGCGuacUGA- -5'
22917 5' -53.8 NC_005137.2 + 70179 0.66 0.929687
Target:  5'- cGUACGcGGUGCCgugggauUGcCGGCGgGUGAUa -3'
miRNA:   3'- -CGUGCaUUACGG-------AC-GCCGCgUACUGa -5'
22917 5' -53.8 NC_005137.2 + 67695 0.75 0.518761
Target:  5'- cGCGCGUuuGUGCCgccucGCGGCGU-UGACa -3'
miRNA:   3'- -CGUGCAu-UACGGa----CGCCGCGuACUGa -5'
22917 5' -53.8 NC_005137.2 + 63450 0.67 0.900379
Target:  5'- cGCGCGUuGUGCCcGCGaGCGac-GGCg -3'
miRNA:   3'- -CGUGCAuUACGGaCGC-CGCguaCUGa -5'
22917 5' -53.8 NC_005137.2 + 63363 0.68 0.859678
Target:  5'- uGCGCaUAAUGCCUucagacgaauuggagGCGuuGCAUGACa -3'
miRNA:   3'- -CGUGcAUUACGGA---------------CGCcgCGUACUGa -5'
22917 5' -53.8 NC_005137.2 + 56655 0.65 0.9491
Target:  5'- aCGCGUGcgaccucGUGCUUGCcgacGGCGCugugGACg -3'
miRNA:   3'- cGUGCAU-------UACGGACG----CCGCGua--CUGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.