miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22918 3' -46.3 NC_005137.2 + 107986 0.66 0.999939
Target:  5'- ---gUUGACgCGcGCGCAgcUUGAUCAa- -3'
miRNA:   3'- gaaaAACUG-GCaCGCGU--AACUAGUgc -5'
22918 3' -46.3 NC_005137.2 + 2248 0.66 0.999939
Target:  5'- --aUUUGGCgCGauugcGCGCGUUGAUUgACGg -3'
miRNA:   3'- gaaAAACUG-GCa----CGCGUAACUAG-UGC- -5'
22918 3' -46.3 NC_005137.2 + 55260 0.66 0.999918
Target:  5'- --cUUUGACCGUGUGC--UGA-CAUu -3'
miRNA:   3'- gaaAAACUGGCACGCGuaACUaGUGc -5'
22918 3' -46.3 NC_005137.2 + 66313 0.66 0.999918
Target:  5'- ------aGCCGaUGCGCGUaccaauugUGGUCGCGu -3'
miRNA:   3'- gaaaaacUGGC-ACGCGUA--------ACUAGUGC- -5'
22918 3' -46.3 NC_005137.2 + 51822 0.66 0.999918
Target:  5'- ------uGCCGuUGCGCuuaaacUUGAUCACGu -3'
miRNA:   3'- gaaaaacUGGC-ACGCGu-----AACUAGUGC- -5'
22918 3' -46.3 NC_005137.2 + 27627 0.66 0.999858
Target:  5'- ---aUUGACUGgcgGCGCAc--GUCGCGa -3'
miRNA:   3'- gaaaAACUGGCa--CGCGUaacUAGUGC- -5'
22918 3' -46.3 NC_005137.2 + 110458 0.66 0.999816
Target:  5'- -----cGGCCG-GCGCGUacacggGGUCACu -3'
miRNA:   3'- gaaaaaCUGGCaCGCGUAa-----CUAGUGc -5'
22918 3' -46.3 NC_005137.2 + 37616 0.66 0.999816
Target:  5'- --cUUUGACCGgaucgaGCGCAaauacgUGGUgCGCGg -3'
miRNA:   3'- gaaAAACUGGCa-----CGCGUa-----ACUA-GUGC- -5'
22918 3' -46.3 NC_005137.2 + 118734 0.66 0.999816
Target:  5'- -gUUUUGGCaaUGCGCAguccgUGAUCAgGc -3'
miRNA:   3'- gaAAAACUGgcACGCGUa----ACUAGUgC- -5'
22918 3' -46.3 NC_005137.2 + 77054 0.67 0.999762
Target:  5'- ----cUGAUCGUGauaGCGUUGccaAUCGCGc -3'
miRNA:   3'- gaaaaACUGGCACg--CGUAAC---UAGUGC- -5'
22918 3' -46.3 NC_005137.2 + 129064 0.67 0.999762
Target:  5'- ------aAUUGUGCGCGUUGAUCGu- -3'
miRNA:   3'- gaaaaacUGGCACGCGUAACUAGUgc -5'
22918 3' -46.3 NC_005137.2 + 118556 0.68 0.999388
Target:  5'- -----cGACCGUggacaugaaaGCGCc-UGAUCACGg -3'
miRNA:   3'- gaaaaaCUGGCA----------CGCGuaACUAGUGC- -5'
22918 3' -46.3 NC_005137.2 + 112547 0.68 0.999388
Target:  5'- ------cGCCGUGCGC---GAUCGCGc -3'
miRNA:   3'- gaaaaacUGGCACGCGuaaCUAGUGC- -5'
22918 3' -46.3 NC_005137.2 + 12852 0.68 0.998584
Target:  5'- -----aGGCCGUagcccgGCGCAaucugGAUCACGg -3'
miRNA:   3'- gaaaaaCUGGCA------CGCGUaa---CUAGUGC- -5'
22918 3' -46.3 NC_005137.2 + 75968 0.7 0.99582
Target:  5'- ----gUGACgCGgcGCGCGUUGGUgCACGg -3'
miRNA:   3'- gaaaaACUG-GCa-CGCGUAACUA-GUGC- -5'
22918 3' -46.3 NC_005137.2 + 60767 0.7 0.994246
Target:  5'- --aUUUGGcCCGUGCGCGUU--UCGCc -3'
miRNA:   3'- gaaAAACU-GGCACGCGUAAcuAGUGc -5'
22918 3' -46.3 NC_005137.2 + 77222 0.72 0.984687
Target:  5'- --cUUUGcCCGUGCGCgAUUGGcaacgcuaUCACGa -3'
miRNA:   3'- gaaAAACuGGCACGCG-UAACU--------AGUGC- -5'
22918 3' -46.3 NC_005137.2 + 93728 0.73 0.975413
Target:  5'- -----gGugCGUGCGCGUcaauuaaagcguUGGUCGCGc -3'
miRNA:   3'- gaaaaaCugGCACGCGUA------------ACUAGUGC- -5'
22918 3' -46.3 NC_005137.2 + 42422 0.75 0.930203
Target:  5'- ----aUGACCGUGaGCAU-GGUCACGu -3'
miRNA:   3'- gaaaaACUGGCACgCGUAaCUAGUGC- -5'
22918 3' -46.3 NC_005137.2 + 10835 1.09 0.021456
Target:  5'- uCUUUUUGACCGUGCGCAUUGAUCACGc -3'
miRNA:   3'- -GAAAAACUGGCACGCGUAACUAGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.