miRNA display CGI


Results 21 - 40 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22924 5' -55 NC_005137.2 + 39286 0.65 0.932895
Target:  5'- uGGCGuacacguCGCGCGCAaaaaGUGCGu-CGUUu -3'
miRNA:   3'- gCUGCu------GCGUGCGUg---CACGCuuGCAA- -5'
22924 5' -55 NC_005137.2 + 41462 0.74 0.533007
Target:  5'- -cAUGGCGCACGCGCuGUccgcaGCGGACGUUg -3'
miRNA:   3'- gcUGCUGCGUGCGUG-CA-----CGCUUGCAA- -5'
22924 5' -55 NC_005137.2 + 41965 0.68 0.821311
Target:  5'- -cGCGugGCGCGC-CGUGacagcgucaGAACGUUu -3'
miRNA:   3'- gcUGCugCGUGCGuGCACg--------CUUGCAA- -5'
22924 5' -55 NC_005137.2 + 42205 0.7 0.756879
Target:  5'- aCGGCGACGCGCGCuacaACGaGUGGcaACGg- -3'
miRNA:   3'- -GCUGCUGCGUGCG----UGCaCGCU--UGCaa -5'
22924 5' -55 NC_005137.2 + 43836 0.66 0.904336
Target:  5'- cCGuCGaACGCGauuUGCACGUGCGaAACGc- -3'
miRNA:   3'- -GCuGC-UGCGU---GCGUGCACGC-UUGCaa -5'
22924 5' -55 NC_005137.2 + 44000 0.66 0.910534
Target:  5'- -cGCGGCGUuuCGCACGUGCaaaucGCGUUc -3'
miRNA:   3'- gcUGCUGCGu-GCGUGCACGcu---UGCAA- -5'
22924 5' -55 NC_005137.2 + 45454 0.68 0.854457
Target:  5'- gGGCGGCGCA-GCACGcGCacGCGUUu -3'
miRNA:   3'- gCUGCUGCGUgCGUGCaCGcuUGCAA- -5'
22924 5' -55 NC_005137.2 + 46219 0.69 0.794578
Target:  5'- -aGCGGCGCACGC-UGUGC-AGCGg- -3'
miRNA:   3'- gcUGCUGCGUGCGuGCACGcUUGCaa -5'
22924 5' -55 NC_005137.2 + 46854 0.73 0.583756
Target:  5'- uGuCGAUGUccguuGCGCGCGUGCGAGCa-- -3'
miRNA:   3'- gCuGCUGCG-----UGCGUGCACGCUUGcaa -5'
22924 5' -55 NC_005137.2 + 48191 0.66 0.927671
Target:  5'- aCGGCGACGU--GUGCGUGUGcACGa- -3'
miRNA:   3'- -GCUGCUGCGugCGUGCACGCuUGCaa -5'
22924 5' -55 NC_005137.2 + 55568 0.66 0.904336
Target:  5'- gGGCGGCGCcguGCGCGUG-GAGCa-- -3'
miRNA:   3'- gCUGCUGCGug-CGUGCACgCUUGcaa -5'
22924 5' -55 NC_005137.2 + 62317 0.65 0.932895
Target:  5'- gGAUGucuCGCAgGCGCcUGCGAAgCGUUc -3'
miRNA:   3'- gCUGCu--GCGUgCGUGcACGCUU-GCAA- -5'
22924 5' -55 NC_005137.2 + 63456 0.67 0.869824
Target:  5'- uGAgGGCGCGCGUuguGCccGCGAGCGa- -3'
miRNA:   3'- gCUgCUGCGUGCG---UGcaCGCUUGCaa -5'
22924 5' -55 NC_005137.2 + 63924 0.67 0.897899
Target:  5'- gGACGGuuCGCACGCG-GUgcGCGAAUGUc -3'
miRNA:   3'- gCUGCU--GCGUGCGUgCA--CGCUUGCAa -5'
22924 5' -55 NC_005137.2 + 64084 0.69 0.803651
Target:  5'- gGACauucGCGCAC-CGCGUGCGAAcCGUc -3'
miRNA:   3'- gCUGc---UGCGUGcGUGCACGCUU-GCAa -5'
22924 5' -55 NC_005137.2 + 64547 0.67 0.877183
Target:  5'- uGACcaACGUGCGCACGUuaaGCGAcACGUUu -3'
miRNA:   3'- gCUGc-UGCGUGCGUGCA---CGCU-UGCAA- -5'
22924 5' -55 NC_005137.2 + 68662 0.74 0.523035
Target:  5'- -aACGuGCGCACGCGCGUgGCGGAUGa- -3'
miRNA:   3'- gcUGC-UGCGUGCGUGCA-CGCUUGCaa -5'
22924 5' -55 NC_005137.2 + 68813 0.66 0.910534
Target:  5'- -----cCGcCACGCGCGUGCGcACGUUg -3'
miRNA:   3'- gcugcuGC-GUGCGUGCACGCuUGCAA- -5'
22924 5' -55 NC_005137.2 + 69269 0.68 0.821311
Target:  5'- gGACGGCGUGCGCG-GUcGCGGcGCGUUu -3'
miRNA:   3'- gCUGCUGCGUGCGUgCA-CGCU-UGCAA- -5'
22924 5' -55 NC_005137.2 + 72287 0.65 0.932895
Target:  5'- gGACG-UGC-CGCAgCGUuagGCGAACGUa -3'
miRNA:   3'- gCUGCuGCGuGCGU-GCA---CGCUUGCAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.