miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22924 5' -55 NC_005137.2 + 1654 0.68 0.854457
Target:  5'- gCGuCGGCGC-CGCGCG-GCgGAAUGUa -3'
miRNA:   3'- -GCuGCUGCGuGCGUGCaCG-CUUGCAa -5'
22924 5' -55 NC_005137.2 + 2458 0.66 0.91649
Target:  5'- cCGACGAccacucuauCGCGCGCuauuuaugcgccGCGUGCGgcAugGUg -3'
miRNA:   3'- -GCUGCU---------GCGUGCG------------UGCACGC--UugCAa -5'
22924 5' -55 NC_005137.2 + 4380 0.67 0.897242
Target:  5'- cCGAcCGACGCAauUGCACGUuuugaagcagcgcGCGGACa-- -3'
miRNA:   3'- -GCU-GCUGCGU--GCGUGCA-------------CGCUUGcaa -5'
22924 5' -55 NC_005137.2 + 4600 0.73 0.573508
Target:  5'- aCGACGGCGCGaaggUGCGCGacGCGggUGUa -3'
miRNA:   3'- -GCUGCUGCGU----GCGUGCa-CGCuuGCAa -5'
22924 5' -55 NC_005137.2 + 5211 0.72 0.604351
Target:  5'- -cGCGGCGCACGCACGacgucucguuUGCGuACGa- -3'
miRNA:   3'- gcUGCUGCGUGCGUGC----------ACGCuUGCaa -5'
22924 5' -55 NC_005137.2 + 7077 0.71 0.707291
Target:  5'- ---gGACGCACGCuCGUGUGcACGUa -3'
miRNA:   3'- gcugCUGCGUGCGuGCACGCuUGCAa -5'
22924 5' -55 NC_005137.2 + 7178 0.77 0.367975
Target:  5'- gCGACGAgGCcgugACGCGCGUGCGccACGUUg -3'
miRNA:   3'- -GCUGCUgCG----UGCGUGCACGCu-UGCAA- -5'
22924 5' -55 NC_005137.2 + 13600 0.68 0.862247
Target:  5'- aCGACG-UGCACGUaaaaccguuggACGaagGCGGACGUg -3'
miRNA:   3'- -GCUGCuGCGUGCG-----------UGCa--CGCUUGCAa -5'
22924 5' -55 NC_005137.2 + 23535 0.66 0.927671
Target:  5'- -uACGAgcCGCACGUAUGUGC-AGCGa- -3'
miRNA:   3'- gcUGCU--GCGUGCGUGCACGcUUGCaa -5'
22924 5' -55 NC_005137.2 + 26669 1.06 0.005517
Target:  5'- aCGACGACGCACGCACGUGCGAACGUUu -3'
miRNA:   3'- -GCUGCUGCGUGCGUGCACGCUUGCAA- -5'
22924 5' -55 NC_005137.2 + 26789 0.72 0.604351
Target:  5'- gCGACG-CGCACGCuuGUaCGAGCGUc -3'
miRNA:   3'- -GCUGCuGCGUGCGugCAcGCUUGCAa -5'
22924 5' -55 NC_005137.2 + 26825 0.68 0.821311
Target:  5'- -aACGuuCGCACGUGCGUGCGucguCGUg -3'
miRNA:   3'- gcUGCu-GCGUGCGUGCACGCuu--GCAa -5'
22924 5' -55 NC_005137.2 + 27621 0.68 0.846462
Target:  5'- uGGCGGCGCACGuCGCGacgucaauUGCGcguACGa- -3'
miRNA:   3'- gCUGCUGCGUGC-GUGC--------ACGCu--UGCaa -5'
22924 5' -55 NC_005137.2 + 27949 0.71 0.67668
Target:  5'- aCGAUGACGCAC-CGCuUGCGGaaaGCGUg -3'
miRNA:   3'- -GCUGCUGCGUGcGUGcACGCU---UGCAa -5'
22924 5' -55 NC_005137.2 + 28053 0.71 0.67668
Target:  5'- -cGCGACGCGCGCugGgaUGCGccaGACGg- -3'
miRNA:   3'- gcUGCUGCGUGCGugC--ACGC---UUGCaa -5'
22924 5' -55 NC_005137.2 + 28409 0.66 0.91649
Target:  5'- aGACGACGCG-GUgGCGUGCGAGuauugcaauguCGUUa -3'
miRNA:   3'- gCUGCUGCGUgCG-UGCACGCUU-----------GCAA- -5'
22924 5' -55 NC_005137.2 + 31797 0.66 0.91649
Target:  5'- gCGugGuCGCguccGCGCGCGUGCacuGAcCGUUg -3'
miRNA:   3'- -GCugCuGCG----UGCGUGCACG---CUuGCAA- -5'
22924 5' -55 NC_005137.2 + 31882 0.68 0.821311
Target:  5'- gCGGCuauACGCACGCgaaACGacGCGAACGUg -3'
miRNA:   3'- -GCUGc--UGCGUGCG---UGCa-CGCUUGCAa -5'
22924 5' -55 NC_005137.2 + 34634 0.7 0.737315
Target:  5'- uGGCGGuuUGCGCGCcguGUGCGAGCGa- -3'
miRNA:   3'- gCUGCU--GCGUGCGug-CACGCUUGCaa -5'
22924 5' -55 NC_005137.2 + 34826 0.72 0.656071
Target:  5'- -cACGGCGCuuGCugGUGCGGugGc- -3'
miRNA:   3'- gcUGCUGCGugCGugCACGCUugCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.