miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22924 5' -55 NC_005137.2 + 26669 1.06 0.005517
Target:  5'- aCGACGACGCACGCACGUGCGAACGUUu -3'
miRNA:   3'- -GCUGCUGCGUGCGUGCACGCUUGCAA- -5'
22924 5' -55 NC_005137.2 + 7178 0.77 0.367975
Target:  5'- gCGACGAgGCcgugACGCGCGUGCGccACGUUg -3'
miRNA:   3'- -GCUGCUgCG----UGCGUGCACGCu-UGCAA- -5'
22924 5' -55 NC_005137.2 + 100412 0.76 0.401598
Target:  5'- -cGCGACGCGCGCcCGUGCGuuGCGg- -3'
miRNA:   3'- gcUGCUGCGUGCGuGCACGCu-UGCaa -5'
22924 5' -55 NC_005137.2 + 68662 0.74 0.523035
Target:  5'- -aACGuGCGCACGCGCGUgGCGGAUGa- -3'
miRNA:   3'- gcUGC-UGCGUGCGUGCA-CGCUUGCaa -5'
22924 5' -55 NC_005137.2 + 41462 0.74 0.533007
Target:  5'- -cAUGGCGCACGCGCuGUccgcaGCGGACGUUg -3'
miRNA:   3'- gcUGCUGCGUGCGUG-CA-----CGCUUGCAA- -5'
22924 5' -55 NC_005137.2 + 4600 0.73 0.573508
Target:  5'- aCGACGGCGCGaaggUGCGCGacGCGggUGUa -3'
miRNA:   3'- -GCUGCUGCGU----GCGUGCa-CGCuuGCAa -5'
22924 5' -55 NC_005137.2 + 46854 0.73 0.583756
Target:  5'- uGuCGAUGUccguuGCGCGCGUGCGAGCa-- -3'
miRNA:   3'- gCuGCUGCG-----UGCGUGCACGCUUGcaa -5'
22924 5' -55 NC_005137.2 + 5211 0.72 0.604351
Target:  5'- -cGCGGCGCACGCACGacgucucguuUGCGuACGa- -3'
miRNA:   3'- gcUGCUGCGUGCGUGC----------ACGCuUGCaa -5'
22924 5' -55 NC_005137.2 + 26789 0.72 0.604351
Target:  5'- gCGACG-CGCACGCuuGUaCGAGCGUc -3'
miRNA:   3'- -GCUGCuGCGUGCGugCAcGCUUGCAa -5'
22924 5' -55 NC_005137.2 + 107498 0.72 0.625031
Target:  5'- uGGCGAgGCGCGCACGUucagGCGccuCGUUu -3'
miRNA:   3'- gCUGCUgCGUGCGUGCA----CGCuu-GCAA- -5'
22924 5' -55 NC_005137.2 + 106355 0.72 0.625031
Target:  5'- uGGCGAC-CGCGUcccACGUGCGGAUGg- -3'
miRNA:   3'- gCUGCUGcGUGCG---UGCACGCUUGCaa -5'
22924 5' -55 NC_005137.2 + 34826 0.72 0.656071
Target:  5'- -cACGGCGCuuGCugGUGCGGugGc- -3'
miRNA:   3'- gcUGCUGCGugCGugCACGCUugCaa -5'
22924 5' -55 NC_005137.2 + 115263 0.71 0.66639
Target:  5'- uGGCGACGCugGCGCcgcgaccuugGCGAGCa-- -3'
miRNA:   3'- gCUGCUGCGugCGUGca--------CGCUUGcaa -5'
22924 5' -55 NC_005137.2 + 28053 0.71 0.67668
Target:  5'- -cGCGACGCGCGCugGgaUGCGccaGACGg- -3'
miRNA:   3'- gcUGCUGCGUGCGugC--ACGC---UUGCaa -5'
22924 5' -55 NC_005137.2 + 27949 0.71 0.67668
Target:  5'- aCGAUGACGCAC-CGCuUGCGGaaaGCGUg -3'
miRNA:   3'- -GCUGCUGCGUGcGUGcACGCU---UGCAa -5'
22924 5' -55 NC_005137.2 + 75972 0.71 0.707291
Target:  5'- -cGCGGCGCGCGUugGUGC--ACGg- -3'
miRNA:   3'- gcUGCUGCGUGCGugCACGcuUGCaa -5'
22924 5' -55 NC_005137.2 + 7077 0.71 0.707291
Target:  5'- ---gGACGCACGCuCGUGUGcACGUa -3'
miRNA:   3'- gcugCUGCGUGCGuGCACGCuUGCAa -5'
22924 5' -55 NC_005137.2 + 110724 0.7 0.727388
Target:  5'- gGGCG-CGCcaagACGCAgGUGCGGGCGc- -3'
miRNA:   3'- gCUGCuGCG----UGCGUgCACGCUUGCaa -5'
22924 5' -55 NC_005137.2 + 80255 0.7 0.727388
Target:  5'- uGACGGCGCgaACGC-CGUgGCGGAgGUUc -3'
miRNA:   3'- gCUGCUGCG--UGCGuGCA-CGCUUgCAA- -5'
22924 5' -55 NC_005137.2 + 34634 0.7 0.737315
Target:  5'- uGGCGGuuUGCGCGCcguGUGCGAGCGa- -3'
miRNA:   3'- gCUGCU--GCGUGCGug-CACGCUUGCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.