miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22924 5' -55 NC_005137.2 + 93515 0.67 0.867574
Target:  5'- cCGACGGCGCAaaUGCACGcgucggccgaaaacUGCGu-CGUg -3'
miRNA:   3'- -GCUGCUGCGU--GCGUGC--------------ACGCuuGCAa -5'
22924 5' -55 NC_005137.2 + 99938 0.69 0.803651
Target:  5'- gCGACG-CGCACGCAUGU-UGGACa-- -3'
miRNA:   3'- -GCUGCuGCGUGCGUGCAcGCUUGcaa -5'
22924 5' -55 NC_005137.2 + 113111 0.69 0.803651
Target:  5'- -uAUGugGCAaGCGCGUGCGccAACGUUc -3'
miRNA:   3'- gcUGCugCGUgCGUGCACGC--UUGCAA- -5'
22924 5' -55 NC_005137.2 + 115736 0.69 0.803651
Target:  5'- aGugGACGCcaaggugcaACGCaACGUGCGcGCGc- -3'
miRNA:   3'- gCugCUGCG---------UGCG-UGCACGCuUGCaa -5'
22924 5' -55 NC_005137.2 + 69269 0.68 0.821311
Target:  5'- gGACGGCGUGCGCG-GUcGCGGcGCGUUu -3'
miRNA:   3'- gCUGCUGCGUGCGUgCA-CGCU-UGCAA- -5'
22924 5' -55 NC_005137.2 + 45454 0.68 0.854457
Target:  5'- gGGCGGCGCA-GCACGcGCacGCGUUu -3'
miRNA:   3'- gCUGCUGCGUgCGUGCaCGcuUGCAA- -5'
22924 5' -55 NC_005137.2 + 110647 0.68 0.854457
Target:  5'- cCGACGGCGuUugGCuugugccCGUGaCGGGCGUg -3'
miRNA:   3'- -GCUGCUGC-GugCGu------GCAC-GCUUGCAa -5'
22924 5' -55 NC_005137.2 + 96424 0.68 0.862247
Target:  5'- gCGGCGACGCGCccgcCGCGuUGCGuuuGCGc- -3'
miRNA:   3'- -GCUGCUGCGUGc---GUGC-ACGCu--UGCaa -5'
22924 5' -55 NC_005137.2 + 13600 0.68 0.862247
Target:  5'- aCGACG-UGCACGUaaaaccguuggACGaagGCGGACGUg -3'
miRNA:   3'- -GCUGCuGCGUGCG-----------UGCa--CGCUUGCAa -5'
22924 5' -55 NC_005137.2 + 130946 0.69 0.775992
Target:  5'- aCGACGACGCGCGCGCuuuuauacaaGCGGuugACGc- -3'
miRNA:   3'- -GCUGCUGCGUGCGUGca--------CGCU---UGCaa -5'
22924 5' -55 NC_005137.2 + 42205 0.7 0.756879
Target:  5'- aCGGCGACGCGCGCuacaACGaGUGGcaACGg- -3'
miRNA:   3'- -GCUGCUGCGUGCG----UGCaCGCU--UGCaa -5'
22924 5' -55 NC_005137.2 + 100253 0.7 0.747149
Target:  5'- gGGCGcCGCaACGCACGgGCGcGCGUc -3'
miRNA:   3'- gCUGCuGCG-UGCGUGCaCGCuUGCAa -5'
22924 5' -55 NC_005137.2 + 68662 0.74 0.523035
Target:  5'- -aACGuGCGCACGCGCGUgGCGGAUGa- -3'
miRNA:   3'- gcUGC-UGCGUGCGUGCA-CGCUUGCaa -5'
22924 5' -55 NC_005137.2 + 41462 0.74 0.533007
Target:  5'- -cAUGGCGCACGCGCuGUccgcaGCGGACGUUg -3'
miRNA:   3'- gcUGCUGCGUGCGUG-CA-----CGCUUGCAA- -5'
22924 5' -55 NC_005137.2 + 115263 0.71 0.66639
Target:  5'- uGGCGACGCugGCGCcgcgaccuugGCGAGCa-- -3'
miRNA:   3'- gCUGCUGCGugCGUGca--------CGCUUGcaa -5'
22924 5' -55 NC_005137.2 + 28053 0.71 0.67668
Target:  5'- -cGCGACGCGCGCugGgaUGCGccaGACGg- -3'
miRNA:   3'- gcUGCUGCGUGCGugC--ACGC---UUGCaa -5'
22924 5' -55 NC_005137.2 + 7077 0.71 0.707291
Target:  5'- ---gGACGCACGCuCGUGUGcACGUa -3'
miRNA:   3'- gcugCUGCGUGCGuGCACGCuUGCAa -5'
22924 5' -55 NC_005137.2 + 75972 0.71 0.707291
Target:  5'- -cGCGGCGCGCGUugGUGC--ACGg- -3'
miRNA:   3'- gcUGCUGCGUGCGugCACGcuUGCaa -5'
22924 5' -55 NC_005137.2 + 80255 0.7 0.727388
Target:  5'- uGACGGCGCgaACGC-CGUgGCGGAgGUUc -3'
miRNA:   3'- gCUGCUGCG--UGCGuGCA-CGCUUgCAA- -5'
22924 5' -55 NC_005137.2 + 34634 0.7 0.737315
Target:  5'- uGGCGGuuUGCGCGCcguGUGCGAGCGa- -3'
miRNA:   3'- gCUGCU--GCGUGCGug-CACGCUUGCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.