miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22925 3' -57.3 NC_005137.2 + 55040 0.66 0.8228
Target:  5'- cAGUUGG-CCACGUGUUUGUCgg--ACa -3'
miRNA:   3'- -UCGACCgGGUGCGCGAACAGagcaUG- -5'
22925 3' -57.3 NC_005137.2 + 72800 0.66 0.8228
Target:  5'- cGUUGGCggCGCGCGCUgccGUCUUGa-- -3'
miRNA:   3'- uCGACCGg-GUGCGCGAa--CAGAGCaug -5'
22925 3' -57.3 NC_005137.2 + 113265 0.66 0.80521
Target:  5'- cGUUGGCgCACGCGCUUGcCa----- -3'
miRNA:   3'- uCGACCGgGUGCGCGAACaGagcaug -5'
22925 3' -57.3 NC_005137.2 + 130776 0.66 0.78698
Target:  5'- uGCUGGCUUugucgGCGCGCgUGUC-CGcGCu -3'
miRNA:   3'- uCGACCGGG-----UGCGCGaACAGaGCaUG- -5'
22925 3' -57.3 NC_005137.2 + 103987 0.67 0.768181
Target:  5'- cAGCUcaaGGUUCAUGCGCagcaUGUCguucUCGUACa -3'
miRNA:   3'- -UCGA---CCGGGUGCGCGa---ACAG----AGCAUG- -5'
22925 3' -57.3 NC_005137.2 + 99193 0.67 0.758592
Target:  5'- cGUUGccGCCCACGUGCcg--CUUGUACa -3'
miRNA:   3'- uCGAC--CGGGUGCGCGaacaGAGCAUG- -5'
22925 3' -57.3 NC_005137.2 + 38260 0.67 0.758592
Target:  5'- aAGCUGGgaaCCGCGUugcccguggGCUUGUC-CGUGg -3'
miRNA:   3'- -UCGACCg--GGUGCG---------CGAACAGaGCAUg -5'
22925 3' -57.3 NC_005137.2 + 32229 0.67 0.739078
Target:  5'- --aUGGCCUugGCaagacGCUUGUCggGUGCu -3'
miRNA:   3'- ucgACCGGGugCG-----CGAACAGagCAUG- -5'
22925 3' -57.3 NC_005137.2 + 7780 0.67 0.739078
Target:  5'- cGCUGGCCgGCGaaacucugaaaUGCaUGUC-CGUACc -3'
miRNA:   3'- uCGACCGGgUGC-----------GCGaACAGaGCAUG- -5'
22925 3' -57.3 NC_005137.2 + 108054 0.68 0.678558
Target:  5'- aAGCUGGgCUACGUGCaUUGUCgu-UACg -3'
miRNA:   3'- -UCGACCgGGUGCGCG-AACAGagcAUG- -5'
22925 3' -57.3 NC_005137.2 + 27435 1.1 0.001406
Target:  5'- cAGCUGGCCCACGCGCUUGUCUCGUACg -3'
miRNA:   3'- -UCGACCGGGUGCGCGAACAGAGCAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.