miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22931 3' -45.1 NC_005137.2 + 63912 0.66 0.999991
Target:  5'- gCGAugcUUGGCGGACGGUUcgcacgcGGUg -3'
miRNA:   3'- gGCUu--AACCGCCUGUUAAacuaa--CCG- -5'
22931 3' -45.1 NC_005137.2 + 100153 0.66 0.999987
Target:  5'- -gGAGUUGGUGG-CGG-UUGGUgcgugcgcugcUGGCg -3'
miRNA:   3'- ggCUUAACCGCCuGUUaAACUA-----------ACCG- -5'
22931 3' -45.1 NC_005137.2 + 4687 0.66 0.999987
Target:  5'- aCGAggaucGUUGGaCGGuuucCAAUUUGGUgaauaGGCa -3'
miRNA:   3'- gGCU-----UAACC-GCCu---GUUAAACUAa----CCG- -5'
22931 3' -45.1 NC_005137.2 + 80610 0.66 0.999981
Target:  5'- aCGGuac-GCGGACAAg--GAUgUGGCg -3'
miRNA:   3'- gGCUuaacCGCCUGUUaaaCUA-ACCG- -5'
22931 3' -45.1 NC_005137.2 + 57040 0.67 0.999952
Target:  5'- uCCGAGUUGGaGGGCcgc--GAUgaaGGCg -3'
miRNA:   3'- -GGCUUAACCgCCUGuuaaaCUAa--CCG- -5'
22931 3' -45.1 NC_005137.2 + 23990 0.68 0.999915
Target:  5'- cCCG--UUGGCGG-CcAUUUGAcUUGGUu -3'
miRNA:   3'- -GGCuuAACCGCCuGuUAAACU-AACCG- -5'
22931 3' -45.1 NC_005137.2 + 73647 0.68 0.999754
Target:  5'- uUCGuucauGUUGaugcacuuuGCGGGCGGUUUGG-UGGCg -3'
miRNA:   3'- -GGCu----UAAC---------CGCCUGUUAAACUaACCG- -5'
22931 3' -45.1 NC_005137.2 + 71599 0.69 0.999601
Target:  5'- gUGcAAUUGGCGGACGAguccgcGUUcGGCa -3'
miRNA:   3'- gGC-UUAACCGCCUGUUaaac--UAA-CCG- -5'
22931 3' -45.1 NC_005137.2 + 80783 0.69 0.999369
Target:  5'- -----gUGGCGGccACAGUgUUGAUUGGUu -3'
miRNA:   3'- ggcuuaACCGCC--UGUUA-AACUAACCG- -5'
22931 3' -45.1 NC_005137.2 + 9465 0.7 0.99903
Target:  5'- gCCGuaaUGGCGGACAAgagcgggUUGuUUGuGCu -3'
miRNA:   3'- -GGCuuaACCGCCUGUUa------AACuAAC-CG- -5'
22931 3' -45.1 NC_005137.2 + 50697 0.7 0.998545
Target:  5'- aUCGcGUUGGCGGGCAcgUcuuuaaaUGGCg -3'
miRNA:   3'- -GGCuUAACCGCCUGUuaAacua---ACCG- -5'
22931 3' -45.1 NC_005137.2 + 46614 0.71 0.99787
Target:  5'- uUGggUUGGCGGgACAGUUuaccgccaUGGUggacagcGGCg -3'
miRNA:   3'- gGCuuAACCGCC-UGUUAA--------ACUAa------CCG- -5'
22931 3' -45.1 NC_005137.2 + 27306 0.71 0.996377
Target:  5'- cCUGAAcggUGGCGGcgGCGuUUUGGgcagUGGCg -3'
miRNA:   3'- -GGCUUa--ACCGCC--UGUuAAACUa---ACCG- -5'
22931 3' -45.1 NC_005137.2 + 42677 0.72 0.994116
Target:  5'- gCCGAuucgGGCGGGCGAgc-GAUUaGCg -3'
miRNA:   3'- -GGCUuaa-CCGCCUGUUaaaCUAAcCG- -5'
22931 3' -45.1 NC_005137.2 + 19700 0.73 0.986258
Target:  5'- aCGggUUGGCGGcggGCAcagaacgccuucGUUUGccUGGCg -3'
miRNA:   3'- gGCuuAACCGCC---UGU------------UAAACuaACCG- -5'
22931 3' -45.1 NC_005137.2 + 64652 0.78 0.904524
Target:  5'- cCCGuuuGUUGGCGGGCAAUgacccgGAcacGGCg -3'
miRNA:   3'- -GGCu--UAACCGCCUGUUAaa----CUaa-CCG- -5'
22931 3' -45.1 NC_005137.2 + 34611 1.18 0.009788
Target:  5'- aCCGAAUUGGCGGACAAUUUGAUUGGCg -3'
miRNA:   3'- -GGCUUAACCGCCUGUUAAACUAACCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.