miRNA display CGI


Results 1 - 20 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22932 5' -49.4 NC_005137.2 + 106612 0.65 0.997656
Target:  5'- uGCGUaGCCCGUCGUUGuucuccgaccaguuGCUcACcACGUu -3'
miRNA:   3'- gCGCG-CGGGUAGUAAU--------------UGA-UGuUGCG- -5'
22932 5' -49.4 NC_005137.2 + 107866 0.65 0.997656
Target:  5'- uCGCgGCGCCCAaUCAgUuguugcaaaacucgUAACgACAAUGCa -3'
miRNA:   3'- -GCG-CGCGGGU-AGU-A--------------AUUGaUGUUGCG- -5'
22932 5' -49.4 NC_005137.2 + 84709 0.65 0.997656
Target:  5'- -aCGCGCCgacguguugcacagCAUCAUUAugUAC-GCGUu -3'
miRNA:   3'- gcGCGCGG--------------GUAGUAAUugAUGuUGCG- -5'
22932 5' -49.4 NC_005137.2 + 14653 0.66 0.997349
Target:  5'- aGCGCGCacaaAUCGUUuaAGCUugAcguaaACGCc -3'
miRNA:   3'- gCGCGCGgg--UAGUAA--UUGAugU-----UGCG- -5'
22932 5' -49.4 NC_005137.2 + 70132 0.66 0.997349
Target:  5'- gGCuCGCCCAaCGguucggGACUAgGugGCg -3'
miRNA:   3'- gCGcGCGGGUaGUaa----UUGAUgUugCG- -5'
22932 5' -49.4 NC_005137.2 + 118909 0.66 0.997349
Target:  5'- uGCGUGuUCCAcaAUUAACaACAGCGUu -3'
miRNA:   3'- gCGCGC-GGGUagUAAUUGaUGUUGCG- -5'
22932 5' -49.4 NC_005137.2 + 57117 0.66 0.997349
Target:  5'- aCGCGCGUgCCAUUAcaaaAACUugAuCGCc -3'
miRNA:   3'- -GCGCGCG-GGUAGUaa--UUGAugUuGCG- -5'
22932 5' -49.4 NC_005137.2 + 96566 0.66 0.997349
Target:  5'- gGCGCGUCgCcgCGcgggUAGCgguCGGCGCg -3'
miRNA:   3'- gCGCGCGG-GuaGUa---AUUGau-GUUGCG- -5'
22932 5' -49.4 NC_005137.2 + 125196 0.66 0.997349
Target:  5'- cCGCGcCGCCCGgcucCGUUGcCUcGCcACGCc -3'
miRNA:   3'- -GCGC-GCGGGUa---GUAAUuGA-UGuUGCG- -5'
22932 5' -49.4 NC_005137.2 + 20217 0.66 0.997349
Target:  5'- gGCGUGCCCGUCGaucAACagagGCuuauuuAUGCg -3'
miRNA:   3'- gCGCGCGGGUAGUaa-UUGa---UGu-----UGCG- -5'
22932 5' -49.4 NC_005137.2 + 47016 0.66 0.997349
Target:  5'- aCGCGCaaucugucGCuCCGUCAUggacgcCUGCAcCGCu -3'
miRNA:   3'- -GCGCG--------CG-GGUAGUAauu---GAUGUuGCG- -5'
22932 5' -49.4 NC_005137.2 + 85354 0.66 0.997349
Target:  5'- gCGCGCGCucuuuuauaCCAUCAgu-AUUGC-GCGUu -3'
miRNA:   3'- -GCGCGCG---------GGUAGUaauUGAUGuUGCG- -5'
22932 5' -49.4 NC_005137.2 + 30462 0.66 0.997303
Target:  5'- uGCGCgGCUCGUUuuauagaGUUGAg-GCGGCGCg -3'
miRNA:   3'- gCGCG-CGGGUAG-------UAAUUgaUGUUGCG- -5'
22932 5' -49.4 NC_005137.2 + 57237 0.66 0.996854
Target:  5'- gGCGCGCCCGUgCGUgg---ACAAUa- -3'
miRNA:   3'- gCGCGCGGGUA-GUAauugaUGUUGcg -5'
22932 5' -49.4 NC_005137.2 + 90740 0.66 0.996854
Target:  5'- uCGUGUucauuuGCUCGUUGacGACUACGGCGCc -3'
miRNA:   3'- -GCGCG------CGGGUAGUaaUUGAUGUUGCG- -5'
22932 5' -49.4 NC_005137.2 + 56727 0.66 0.996854
Target:  5'- -aCGCGCCUcuuAUCAUgcGCga-AACGCa -3'
miRNA:   3'- gcGCGCGGG---UAGUAauUGaugUUGCG- -5'
22932 5' -49.4 NC_005137.2 + 68777 0.66 0.996854
Target:  5'- gGCGCGaaaaCCGUgA--AACUACggUGCc -3'
miRNA:   3'- gCGCGCg---GGUAgUaaUUGAUGuuGCG- -5'
22932 5' -49.4 NC_005137.2 + 9514 0.66 0.996854
Target:  5'- cCGC-CGCUUGUCAcgUUGACgaACAGCGUg -3'
miRNA:   3'- -GCGcGCGGGUAGU--AAUUGa-UGUUGCG- -5'
22932 5' -49.4 NC_005137.2 + 43919 0.66 0.996854
Target:  5'- gGCGCGCUgGuaguagcguUCGUUGGCgcGCAgcuuACGCg -3'
miRNA:   3'- gCGCGCGGgU---------AGUAAUUGa-UGU----UGCG- -5'
22932 5' -49.4 NC_005137.2 + 108739 0.66 0.996521
Target:  5'- aCGCGCagacaaacgacGCgCAUCGUUuGCaaacaucgaucacguUACAACGCg -3'
miRNA:   3'- -GCGCG-----------CGgGUAGUAAuUG---------------AUGUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.