miRNA display CGI


Results 1 - 20 of 143 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22932 5' -49.4 NC_005137.2 + 35416 1.12 0.006953
Target:  5'- gCGCGCGCCCAUCAUUAACUACAACGCc -3'
miRNA:   3'- -GCGCGCGGGUAGUAAUUGAUGUUGCG- -5'
22932 5' -49.4 NC_005137.2 + 98129 0.81 0.481922
Target:  5'- cCGCGCGCCCGUU-UUGcCUACAaugACGCg -3'
miRNA:   3'- -GCGCGCGGGUAGuAAUuGAUGU---UGCG- -5'
22932 5' -49.4 NC_005137.2 + 119217 0.8 0.506181
Target:  5'- uGCGUGCCCAUCGUguacaacccuugcggUAaugGCUGCAcuGCGCg -3'
miRNA:   3'- gCGCGCGGGUAGUA---------------AU---UGAUGU--UGCG- -5'
22932 5' -49.4 NC_005137.2 + 100408 0.8 0.543497
Target:  5'- aCGCGCGCCCGUgCGU----UGCGGCGCc -3'
miRNA:   3'- -GCGCGCGGGUA-GUAauugAUGUUGCG- -5'
22932 5' -49.4 NC_005137.2 + 26813 0.79 0.575261
Target:  5'- uGCGUGCgUCGUCGUguucgcGCUGCGACGCg -3'
miRNA:   3'- gCGCGCG-GGUAGUAau----UGAUGUUGCG- -5'
22932 5' -49.4 NC_005137.2 + 18243 0.79 0.585949
Target:  5'- uGCGCGUCguUCGU--ACUGCGGCGCc -3'
miRNA:   3'- gCGCGCGGguAGUAauUGAUGUUGCG- -5'
22932 5' -49.4 NC_005137.2 + 22456 0.79 0.596674
Target:  5'- aCGUGCGCuCCGUCG---GCUGCAccGCGCu -3'
miRNA:   3'- -GCGCGCG-GGUAGUaauUGAUGU--UGCG- -5'
22932 5' -49.4 NC_005137.2 + 108172 0.78 0.607427
Target:  5'- gCGCGCGCCCGcccucgCGUUug--GCAACGCg -3'
miRNA:   3'- -GCGCGCGGGUa-----GUAAuugaUGUUGCG- -5'
22932 5' -49.4 NC_005137.2 + 99971 0.78 0.639777
Target:  5'- cCGCGCGCCUcuUCGUgcGCcaGCAGCGCa -3'
miRNA:   3'- -GCGCGCGGGu-AGUAauUGa-UGUUGCG- -5'
22932 5' -49.4 NC_005137.2 + 17669 0.78 0.639777
Target:  5'- aGCGCGCCC-UCGUUAAC----GCGCa -3'
miRNA:   3'- gCGCGCGGGuAGUAAUUGauguUGCG- -5'
22932 5' -49.4 NC_005137.2 + 28869 0.78 0.650559
Target:  5'- uGCGCGCCUuUCA--AACUGCAccauuACGCg -3'
miRNA:   3'- gCGCGCGGGuAGUaaUUGAUGU-----UGCG- -5'
22932 5' -49.4 NC_005137.2 + 32157 0.77 0.672064
Target:  5'- aCG-GCGCCCAUCGaaugGAUguUGCAACGCg -3'
miRNA:   3'- -GCgCGCGGGUAGUaa--UUG--AUGUUGCG- -5'
22932 5' -49.4 NC_005137.2 + 63314 0.76 0.735379
Target:  5'- aCGCGCGCCC-UC----ACUACAAUGUc -3'
miRNA:   3'- -GCGCGCGGGuAGuaauUGAUGUUGCG- -5'
22932 5' -49.4 NC_005137.2 + 123073 0.75 0.784527
Target:  5'- gCGCGCaGCCUuggugagGUCGUUGACUggGCAaauGCGCa -3'
miRNA:   3'- -GCGCG-CGGG-------UAGUAAUUGA--UGU---UGCG- -5'
22932 5' -49.4 NC_005137.2 + 124397 0.75 0.795103
Target:  5'- uGCGCGCgCGUCGUUu----CAGCGCg -3'
miRNA:   3'- gCGCGCGgGUAGUAAuugauGUUGCG- -5'
22932 5' -49.4 NC_005137.2 + 52529 0.74 0.813815
Target:  5'- uCGCG-GCCCGUCAUgucggagaaaAACUGCAcaauaaGCGCg -3'
miRNA:   3'- -GCGCgCGGGUAGUAa---------UUGAUGU------UGCG- -5'
22932 5' -49.4 NC_005137.2 + 5069 0.74 0.813815
Target:  5'- gCGUGCGCCgCGaCAUUGAg-ACGGCGCg -3'
miRNA:   3'- -GCGCGCGG-GUaGUAAUUgaUGUUGCG- -5'
22932 5' -49.4 NC_005137.2 + 1997 0.74 0.813815
Target:  5'- cCGCGUGCaCAgcUCGUgcacGCUGCGGCGCa -3'
miRNA:   3'- -GCGCGCGgGU--AGUAau--UGAUGUUGCG- -5'
22932 5' -49.4 NC_005137.2 + 110586 0.74 0.813815
Target:  5'- gGCGCGCCCAUCcug---UGCGACGa -3'
miRNA:   3'- gCGCGCGGGUAGuaauugAUGUUGCg -5'
22932 5' -49.4 NC_005137.2 + 109437 0.74 0.822901
Target:  5'- uGCGCgGCCCAUCGgucACc-CAACGCg -3'
miRNA:   3'- gCGCG-CGGGUAGUaauUGauGUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.