miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22933 3' -53.7 NC_005137.2 + 56139 0.66 0.950677
Target:  5'- --gGGUGCCGUCGGCCacguUUGCAAUc- -3'
miRNA:   3'- uugCCACGGCAGUUGGc---AGUGUUGcu -5'
22933 3' -53.7 NC_005137.2 + 130406 0.66 0.950677
Target:  5'- cGGCGGUGgCGgCGGCaCGUUugGCGGCGGa -3'
miRNA:   3'- -UUGCCACgGCaGUUG-GCAG--UGUUGCU- -5'
22933 3' -53.7 NC_005137.2 + 110802 0.67 0.920789
Target:  5'- cACGGgcacaagccaaacGCCGUCGgcgcguuugugcacgGCCGUCACcACGGa -3'
miRNA:   3'- uUGCCa------------CGGCAGU---------------UGGCAGUGuUGCU- -5'
22933 3' -53.7 NC_005137.2 + 95205 0.67 0.920789
Target:  5'- cAUGGUGCaCGUCAAUcaagcgaaCGUaCGCAAUGAc -3'
miRNA:   3'- uUGCCACG-GCAGUUG--------GCA-GUGUUGCU- -5'
22933 3' -53.7 NC_005137.2 + 104018 0.67 0.908821
Target:  5'- -uCGGUGUCGUCcacguuuCUGUC-CGACGAu -3'
miRNA:   3'- uuGCCACGGCAGuu-----GGCAGuGUUGCU- -5'
22933 3' -53.7 NC_005137.2 + 68460 0.68 0.874615
Target:  5'- aGGCaGUGguUCGUCGACCGUUGCGACa- -3'
miRNA:   3'- -UUGcCAC--GGCAGUUGGCAGUGUUGcu -5'
22933 3' -53.7 NC_005137.2 + 25510 0.68 0.874615
Target:  5'- cAUGGcGCCGUCAcGCuCGUUGCAACGc -3'
miRNA:   3'- uUGCCaCGGCAGU-UG-GCAGUGUUGCu -5'
22933 3' -53.7 NC_005137.2 + 23593 0.69 0.851319
Target:  5'- -uCGGUGCUuucccaGUCuuugaggccGCCGUCGCAAUGAa -3'
miRNA:   3'- uuGCCACGG------CAGu--------UGGCAGUGUUGCU- -5'
22933 3' -53.7 NC_005137.2 + 17113 0.69 0.834731
Target:  5'- uGAUGGUGCCcUCAgcgagccacauuGCCGUCACcAGCa- -3'
miRNA:   3'- -UUGCCACGGcAGU------------UGGCAGUG-UUGcu -5'
22933 3' -53.7 NC_005137.2 + 17236 0.7 0.817368
Target:  5'- cAUGGUGCC-UCGacaaaaaggcACCGUCGCGauGCGAu -3'
miRNA:   3'- uUGCCACGGcAGU----------UGGCAGUGU--UGCU- -5'
22933 3' -53.7 NC_005137.2 + 31821 0.72 0.711214
Target:  5'- cGGCGGUGUCGUCcGCUaugCACAGCGu -3'
miRNA:   3'- -UUGCCACGGCAGuUGGca-GUGUUGCu -5'
22933 3' -53.7 NC_005137.2 + 108269 0.72 0.659336
Target:  5'- uGCGGUGCUG-CGAUCGgcgCGCAACGc -3'
miRNA:   3'- uUGCCACGGCaGUUGGCa--GUGUUGCu -5'
22933 3' -53.7 NC_005137.2 + 51841 0.76 0.474902
Target:  5'- cAACGGUGCCG-CAACaacugCGUCAgCGACGAc -3'
miRNA:   3'- -UUGCCACGGCaGUUG-----GCAGU-GUUGCU- -5'
22933 3' -53.7 NC_005137.2 + 13202 0.76 0.446393
Target:  5'- cGCGGUGUCGUguccgacgaaaCcACCGUCACGGCGGa -3'
miRNA:   3'- uUGCCACGGCA-----------GuUGGCAGUGUUGCU- -5'
22933 3' -53.7 NC_005137.2 + 36479 1.07 0.005783
Target:  5'- cAACGGUGCCGUCAACCGUCACAACGAu -3'
miRNA:   3'- -UUGCCACGGCAGUUGGCAGUGUUGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.