miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22941 5' -55.7 NC_005137.2 + 84333 0.66 0.908431
Target:  5'- -uCGggUCGGUaGG-UGuuGCGCGAUc -3'
miRNA:   3'- auGCuuAGCCA-CCuGCggCGCGUUGc -5'
22941 5' -55.7 NC_005137.2 + 24464 0.66 0.902168
Target:  5'- cGCGGAcgCGGUGGACugcaacaaGCCGUcuGuCAGCGc -3'
miRNA:   3'- aUGCUUa-GCCACCUG--------CGGCG--C-GUUGC- -5'
22941 5' -55.7 NC_005137.2 + 112676 0.67 0.859747
Target:  5'- aGCGggUcCGGgucgGGACGCaCGUuaAACGc -3'
miRNA:   3'- aUGCuuA-GCCa---CCUGCG-GCGcgUUGC- -5'
22941 5' -55.7 NC_005137.2 + 99521 0.68 0.827222
Target:  5'- aACGggUUuGcGGGCGCCGUGCAu-- -3'
miRNA:   3'- aUGCuuAGcCaCCUGCGGCGCGUugc -5'
22941 5' -55.7 NC_005137.2 + 115725 0.68 0.81862
Target:  5'- gACGAuauacuaGUGGACGCCaagGUGCAACGc -3'
miRNA:   3'- aUGCUuagc---CACCUGCGG---CGCGUUGC- -5'
22941 5' -55.7 NC_005137.2 + 56234 0.68 0.81862
Target:  5'- uUGCGuuUUGG-GGACGugaugccgcaCCGCGCAAUGu -3'
miRNA:   3'- -AUGCuuAGCCaCCUGC----------GGCGCGUUGC- -5'
22941 5' -55.7 NC_005137.2 + 55577 0.68 0.81862
Target:  5'- gGCGGAcgCGG-GcGGCGCCGUGC-GCGu -3'
miRNA:   3'- aUGCUUa-GCCaC-CUGCGGCGCGuUGC- -5'
22941 5' -55.7 NC_005137.2 + 107147 0.68 0.810731
Target:  5'- gGCGggUUGG-GuGACGCCGaccgucaaaagcugaGCGACGu -3'
miRNA:   3'- aUGCuuAGCCaC-CUGCGGCg--------------CGUUGC- -5'
22941 5' -55.7 NC_005137.2 + 70925 0.68 0.809846
Target:  5'- --aGAAUUGGcauUGGACGCCGaGCGucACGg -3'
miRNA:   3'- augCUUAGCC---ACCUGCGGCgCGU--UGC- -5'
22941 5' -55.7 NC_005137.2 + 98367 0.68 0.800908
Target:  5'- gUGCGc--CGGUuuGGCGCCGuCGCGACGg -3'
miRNA:   3'- -AUGCuuaGCCAc-CUGCGGC-GCGUUGC- -5'
22941 5' -55.7 NC_005137.2 + 52795 0.68 0.800908
Target:  5'- aAgGAGguugcugCGGUGGugGCUGagGCGGCGg -3'
miRNA:   3'- aUgCUUa------GCCACCugCGGCg-CGUUGC- -5'
22941 5' -55.7 NC_005137.2 + 88176 0.68 0.800908
Target:  5'- -cCGccUCGGcGGugGCCGCGcCGGCa -3'
miRNA:   3'- auGCuuAGCCaCCugCGGCGC-GUUGc -5'
22941 5' -55.7 NC_005137.2 + 33385 0.69 0.773198
Target:  5'- -gUGAGUCGGcggcguuaaacUGGuucuCGCCGCGguGCGc -3'
miRNA:   3'- auGCUUAGCC-----------ACCu---GCGGCGCguUGC- -5'
22941 5' -55.7 NC_005137.2 + 107181 0.69 0.734502
Target:  5'- --aGAGUUGGUGuuguucauuuCGCUGCGCAGCGu -3'
miRNA:   3'- augCUUAGCCACcu--------GCGGCGCGUUGC- -5'
22941 5' -55.7 NC_005137.2 + 124993 0.7 0.684168
Target:  5'- gUugGaAAUCGGgcgGGAUGCCGCacCGGCGa -3'
miRNA:   3'- -AugC-UUAGCCa--CCUGCGGCGc-GUUGC- -5'
22941 5' -55.7 NC_005137.2 + 1668 0.71 0.663663
Target:  5'- -cCGAAUUGaacaacgcGUcGGCGCCGCGCGGCGg -3'
miRNA:   3'- auGCUUAGC--------CAcCUGCGGCGCGUUGC- -5'
22941 5' -55.7 NC_005137.2 + 48767 0.71 0.632733
Target:  5'- gGCGcGAUCGuUGGACGCgGCGCcGCa -3'
miRNA:   3'- aUGC-UUAGCcACCUGCGgCGCGuUGc -5'
22941 5' -55.7 NC_005137.2 + 119882 0.72 0.591521
Target:  5'- aUGCaGGUUGccaUGGGCGCUGCGCGGCGg -3'
miRNA:   3'- -AUGcUUAGCc--ACCUGCGGCGCGUUGC- -5'
22941 5' -55.7 NC_005137.2 + 107970 0.72 0.581274
Target:  5'- aUGCGcGAUCGGUcgcguuGACGCgCGCGCAGCu -3'
miRNA:   3'- -AUGC-UUAGCCAc-----CUGCG-GCGCGUUGc -5'
22941 5' -55.7 NC_005137.2 + 88490 0.72 0.581274
Target:  5'- cGCGcAAUUGGacGGAauguCGCCGCGCAGCa -3'
miRNA:   3'- aUGC-UUAGCCa-CCU----GCGGCGCGUUGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.