Results 41 - 47 of 47 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 22943 | 5' | -51.2 | NC_005137.2 | + | 32357 | 0.73 | 0.75937 |
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Target: 5'- --cGUCUGccaaACGCCGCCGUgCGCCg -3' miRNA: 3'- aauCAGAUuug-UGUGGCGGCGaGUGG- -5' |
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| 22943 | 5' | -51.2 | NC_005137.2 | + | 55655 | 0.74 | 0.718333 |
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Target: 5'- -aAGUUUAAGCuaaugucguaGCACuCGCCGUUCACUa -3' miRNA: 3'- aaUCAGAUUUG----------UGUG-GCGGCGAGUGG- -5' |
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| 22943 | 5' | -51.2 | NC_005137.2 | + | 125143 | 0.74 | 0.697281 |
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Target: 5'- --cGUCUugacAAUGCACCGCCGCUgACa -3' miRNA: 3'- aauCAGAu---UUGUGUGGCGGCGAgUGg -5' |
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| 22943 | 5' | -51.2 | NC_005137.2 | + | 33234 | 0.77 | 0.547531 |
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Target: 5'- -cAGUUUA---ACGCCGCCGaCUCACCg -3' miRNA: 3'- aaUCAGAUuugUGUGGCGGC-GAGUGG- -5' |
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| 22943 | 5' | -51.2 | NC_005137.2 | + | 130188 | 0.79 | 0.437089 |
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Target: 5'- cUGGUgUAAACGUGCCGCCGC-CACCu -3' miRNA: 3'- aAUCAgAUUUGUGUGGCGGCGaGUGG- -5' |
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| 22943 | 5' | -51.2 | NC_005137.2 | + | 176 | 0.79 | 0.427676 |
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Target: 5'- -gAGUUUGcgccuGACGCGCCGCUGUUCACUg -3' miRNA: 3'- aaUCAGAU-----UUGUGUGGCGGCGAGUGG- -5' |
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| 22943 | 5' | -51.2 | NC_005137.2 | + | 63056 | 1.11 | 0.004705 |
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Target: 5'- uUUAGUCUAAACACACCGCCGCUCACCa -3' miRNA: 3'- -AAUCAGAUUUGUGUGGCGGCGAGUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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