miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22946 3' -57.3 NC_005137.2 + 7174 0.69 0.638047
Target:  5'- --cGAgGCCGugacGCGCGuGCGCCAC-GUUg -3'
miRNA:   3'- uaaCUgCGGU----UGCGC-CGCGGUGaCAG- -5'
22946 3' -57.3 NC_005137.2 + 12971 0.71 0.515338
Target:  5'- uUUGACGCCGuugGCGCugugGGaCGCCACccgGUCc -3'
miRNA:   3'- uAACUGCGGU---UGCG----CC-GCGGUGa--CAG- -5'
22946 3' -57.3 NC_005137.2 + 13527 0.71 0.52928
Target:  5'- cGUUGgauucACGCCGaccgucacuuuaauaGCGCGGCGCaACUGUUg -3'
miRNA:   3'- -UAAC-----UGCGGU---------------UGCGCCGCGgUGACAG- -5'
22946 3' -57.3 NC_005137.2 + 17022 0.67 0.730206
Target:  5'- aAUUGGCGCaucucgugcagCAACGCGGUGUCAUcaaacacguUGUUg -3'
miRNA:   3'- -UAACUGCG-----------GUUGCGCCGCGGUG---------ACAG- -5'
22946 3' -57.3 NC_005137.2 + 18410 0.69 0.617287
Target:  5'- uGUUaACG--GACGCGGCGCCGCaGUCg -3'
miRNA:   3'- -UAAcUGCggUUGCGCCGCGGUGaCAG- -5'
22946 3' -57.3 NC_005137.2 + 24473 0.7 0.565721
Target:  5'- uGUUGuguGCGCgGACGCGGUggacugcaacaaGCCGuCUGUCa -3'
miRNA:   3'- -UAAC---UGCGgUUGCGCCG------------CGGU-GACAG- -5'
22946 3' -57.3 NC_005137.2 + 27466 0.69 0.617287
Target:  5'- aAUUGACGUC-GCGaCGuGCGCCGCcaGUCa -3'
miRNA:   3'- -UAACUGCGGuUGC-GC-CGCGGUGa-CAG- -5'
22946 3' -57.3 NC_005137.2 + 27880 0.8 0.14597
Target:  5'- gGUUGGCGaucgCGugGCGGCGCCACggGUCa -3'
miRNA:   3'- -UAACUGCg---GUugCGCCGCGGUGa-CAG- -5'
22946 3' -57.3 NC_005137.2 + 28208 0.66 0.806394
Target:  5'- -cUGGCGCauccCAGCGCGcgucGCGCCAC-GUUc -3'
miRNA:   3'- uaACUGCG----GUUGCGC----CGCGGUGaCAG- -5'
22946 3' -57.3 NC_005137.2 + 31571 0.66 0.797343
Target:  5'- --cGGCGUCGACGUGcaGCuGCCACgGUUg -3'
miRNA:   3'- uaaCUGCGGUUGCGC--CG-CGGUGaCAG- -5'
22946 3' -57.3 NC_005137.2 + 35350 0.69 0.614175
Target:  5'- --cGAaGCCGacccgaccaacaacACGCaGGCGCCGCUGUg -3'
miRNA:   3'- uaaCUgCGGU--------------UGCG-CCGCGGUGACAg -5'
22946 3' -57.3 NC_005137.2 + 38522 0.67 0.740136
Target:  5'- gGUUG-CGCauauuUggUGCGGUcaacGCCACUGUCa -3'
miRNA:   3'- -UAACuGCG-----GuuGCGCCG----CGGUGACAG- -5'
22946 3' -57.3 NC_005137.2 + 39650 0.67 0.749969
Target:  5'- uAUUGcUGCCAGgcuaaGCGGCGCCGCa--- -3'
miRNA:   3'- -UAACuGCGGUUg----CGCCGCGGUGacag -5'
22946 3' -57.3 NC_005137.2 + 44979 0.69 0.648424
Target:  5'- uUUGACGCCGACaaGGCgGCCGacgUGUUu -3'
miRNA:   3'- uAACUGCGGUUGcgCCG-CGGUg--ACAG- -5'
22946 3' -57.3 NC_005137.2 + 45686 0.72 0.438937
Target:  5'- --cGGCGCCAACGCGGaUGCUcUUGUa -3'
miRNA:   3'- uaaCUGCGGUUGCGCC-GCGGuGACAg -5'
22946 3' -57.3 NC_005137.2 + 46045 0.69 0.627665
Target:  5'- --cGGCGCCAACGaGGUuaugccGCCGCUG-Ca -3'
miRNA:   3'- uaaCUGCGGUUGCgCCG------CGGUGACaG- -5'
22946 3' -57.3 NC_005137.2 + 46231 0.68 0.68971
Target:  5'- ---cGCGuCCAAaauaGCGGCGCaCGCUGUg -3'
miRNA:   3'- uaacUGC-GGUUg---CGCCGCG-GUGACAg -5'
22946 3' -57.3 NC_005137.2 + 46610 0.68 0.699932
Target:  5'- uUUGACGUCGGCGUGcauGUGCCACa--- -3'
miRNA:   3'- uAACUGCGGUUGCGC---CGCGGUGacag -5'
22946 3' -57.3 NC_005137.2 + 46823 0.67 0.759695
Target:  5'- -cUGGCGCguGCuuucgauuaaaGCGGCgcugcccuuagcGCCGCUGUCc -3'
miRNA:   3'- uaACUGCGguUG-----------CGCCG------------CGGUGACAG- -5'
22946 3' -57.3 NC_005137.2 + 47386 0.66 0.797343
Target:  5'- -gUGGCGgCAAU-CaGCGCCugUGUCa -3'
miRNA:   3'- uaACUGCgGUUGcGcCGCGGugACAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.