miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22946 3' -57.3 NC_005137.2 + 72307 1.06 0.002352
Target:  5'- aAUUGACGCCAACGCGGCGCCACUGUCc -3'
miRNA:   3'- -UAACUGCGGUUGCGCCGCGGUGACAG- -5'
22946 3' -57.3 NC_005137.2 + 81590 0.67 0.769305
Target:  5'- cUUGACGCgUGACGCGGCaGCaguaaGCaggGUCg -3'
miRNA:   3'- uAACUGCG-GUUGCGCCG-CGg----UGa--CAG- -5'
22946 3' -57.3 NC_005137.2 + 47386 0.66 0.797343
Target:  5'- -gUGGCGgCAAU-CaGCGCCugUGUCa -3'
miRNA:   3'- uaACUGCgGUUGcGcCGCGGugACAG- -5'
22946 3' -57.3 NC_005137.2 + 115137 0.66 0.806394
Target:  5'- --gGGCGgCAcgugAC-CGGCGgCACUGUCg -3'
miRNA:   3'- uaaCUGCgGU----UGcGCCGCgGUGACAG- -5'
22946 3' -57.3 NC_005137.2 + 129158 0.66 0.806394
Target:  5'- --aGGCGCCGcgACGaCGGUG-CACUcGUCg -3'
miRNA:   3'- uaaCUGCGGU--UGC-GCCGCgGUGA-CAG- -5'
22946 3' -57.3 NC_005137.2 + 63004 0.66 0.806394
Target:  5'- --gGAC-CCAuggUGCGGCGCCgGCgUGUCg -3'
miRNA:   3'- uaaCUGcGGUu--GCGCCGCGG-UG-ACAG- -5'
22946 3' -57.3 NC_005137.2 + 48142 0.66 0.815283
Target:  5'- --cGugGCC---GCGGUGCCAUUGa- -3'
miRNA:   3'- uaaCugCGGuugCGCCGCGGUGACag -5'
22946 3' -57.3 NC_005137.2 + 106286 0.66 0.815283
Target:  5'- --cGAUGCCcca-CGGCGCCAaUGUCu -3'
miRNA:   3'- uaaCUGCGGuugcGCCGCGGUgACAG- -5'
22946 3' -57.3 NC_005137.2 + 67529 0.66 0.815283
Target:  5'- cGUUGAUGUCAACGCcgcgaGGCGgCACa--- -3'
miRNA:   3'- -UAACUGCGGUUGCG-----CCGCgGUGacag -5'
22946 3' -57.3 NC_005137.2 + 39650 0.67 0.749969
Target:  5'- uAUUGcUGCCAGgcuaaGCGGCGCCGCa--- -3'
miRNA:   3'- -UAACuGCGGUUg----CGCCGCGGUGacag -5'
22946 3' -57.3 NC_005137.2 + 63967 0.68 0.68971
Target:  5'- uUUGACGCC-GCGauGgGCCAaUGUCg -3'
miRNA:   3'- uAACUGCGGuUGCgcCgCGGUgACAG- -5'
22946 3' -57.3 NC_005137.2 + 98016 0.69 0.648424
Target:  5'- --aGugGCCAGCGUgcacgucgGGCGCUGCgagcggGUCc -3'
miRNA:   3'- uaaCugCGGUUGCG--------CCGCGGUGa-----CAG- -5'
22946 3' -57.3 NC_005137.2 + 27880 0.8 0.14597
Target:  5'- gGUUGGCGaucgCGugGCGGCGCCACggGUCa -3'
miRNA:   3'- -UAACUGCg---GUugCGCCGCGGUGa-CAG- -5'
22946 3' -57.3 NC_005137.2 + 45686 0.72 0.438937
Target:  5'- --cGGCGCCAACGCGGaUGCUcUUGUa -3'
miRNA:   3'- uaaCUGCGGUUGCGCC-GCGGuGACAg -5'
22946 3' -57.3 NC_005137.2 + 124940 0.72 0.438937
Target:  5'- cUUGAuCGCCGgguugcgaugaACGCGGCGCCGgUGa- -3'
miRNA:   3'- uAACU-GCGGU-----------UGCGCCGCGGUgACag -5'
22946 3' -57.3 NC_005137.2 + 13527 0.71 0.52928
Target:  5'- cGUUGgauucACGCCGaccgucacuuuaauaGCGCGGCGCaACUGUUg -3'
miRNA:   3'- -UAAC-----UGCGGU---------------UGCGCCGCGgUGACAG- -5'
22946 3' -57.3 NC_005137.2 + 48766 0.7 0.585222
Target:  5'- --cGGCGCgAucguuggACGCGGCGCCGCa--- -3'
miRNA:   3'- uaaCUGCGgU-------UGCGCCGCGGUGacag -5'
22946 3' -57.3 NC_005137.2 + 35350 0.69 0.614175
Target:  5'- --cGAaGCCGacccgaccaacaacACGCaGGCGCCGCUGUg -3'
miRNA:   3'- uaaCUgCGGU--------------UGCG-CCGCGGUGACAg -5'
22946 3' -57.3 NC_005137.2 + 27466 0.69 0.617287
Target:  5'- aAUUGACGUC-GCGaCGuGCGCCGCcaGUCa -3'
miRNA:   3'- -UAACUGCGGuUGC-GC-CGCGGUGa-CAG- -5'
22946 3' -57.3 NC_005137.2 + 46045 0.69 0.627665
Target:  5'- --cGGCGCCAACGaGGUuaugccGCCGCUG-Ca -3'
miRNA:   3'- uaaCUGCGGUUGCgCCG------CGGUGACaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.