miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
22946 5' -62.5 NC_005137.2 + 2177 0.74 0.208979
Target:  5'- gGCGCGAccuaaauaGuCUGCGCCGCa--GCGUGCAc -3'
miRNA:   3'- -CGCGCU--------C-GACGCGGCGaggCGCACGU- -5'
22946 5' -62.5 NC_005137.2 + 7163 0.72 0.277507
Target:  5'- cGCGCGuGCgccacguugugcccgGCGaCCGCucgUCCGUGUGCGc -3'
miRNA:   3'- -CGCGCuCGa--------------CGC-GGCG---AGGCGCACGU- -5'
22946 5' -62.5 NC_005137.2 + 12096 0.68 0.432777
Target:  5'- aGUGCGAGUUGCGCUGCagaaacggUgacgguguuuaaagCGCGUGCc -3'
miRNA:   3'- -CGCGCUCGACGCGGCGa-------G--------------GCGCACGu -5'
22946 5' -62.5 NC_005137.2 + 17912 0.69 0.4097
Target:  5'- gGCGCGuGCa-CGUCGUUCCGgaGUGCAa -3'
miRNA:   3'- -CGCGCuCGacGCGGCGAGGCg-CACGU- -5'
22946 5' -62.5 NC_005137.2 + 21227 0.69 0.384978
Target:  5'- aCGUGGGC-GaCGCUGCgggCCGCGUGUc -3'
miRNA:   3'- cGCGCUCGaC-GCGGCGa--GGCGCACGu -5'
22946 5' -62.5 NC_005137.2 + 22406 0.68 0.471034
Target:  5'- uCGgGAGC-GCGCUGCUCaaaGUGCAc -3'
miRNA:   3'- cGCgCUCGaCGCGGCGAGgcgCACGU- -5'
22946 5' -62.5 NC_005137.2 + 26522 0.66 0.595344
Target:  5'- aCGCGGcGCUG-GCUGCguUuuGCGUGCc -3'
miRNA:   3'- cGCGCU-CGACgCGGCG--AggCGCACGu -5'
22946 5' -62.5 NC_005137.2 + 31713 0.69 0.384978
Target:  5'- aCGUGuGCacguucGCGUCGUUUCGCGUGCGu -3'
miRNA:   3'- cGCGCuCGa-----CGCGGCGAGGCGCACGU- -5'
22946 5' -62.5 NC_005137.2 + 31798 0.68 0.435387
Target:  5'- aGCGUG-GUcGCGuCCGCg-CGCGUGCAc -3'
miRNA:   3'- -CGCGCuCGaCGC-GGCGagGCGCACGU- -5'
22946 5' -62.5 NC_005137.2 + 45602 0.77 0.127671
Target:  5'- uGCGCGuGCUGCGCCGC-CCGCu---- -3'
miRNA:   3'- -CGCGCuCGACGCGGCGaGGCGcacgu -5'
22946 5' -62.5 NC_005137.2 + 48767 0.71 0.309985
Target:  5'- gGCGCGAucguuggacGCgGCGCCGCacagCGUGUGCGg -3'
miRNA:   3'- -CGCGCU---------CGaCGCGGCGag--GCGCACGU- -5'
22946 5' -62.5 NC_005137.2 + 49688 0.68 0.444154
Target:  5'- gGCGCGcGGCgguaacuacGCGCCGCUUgGCcgGUGUAg -3'
miRNA:   3'- -CGCGC-UCGa--------CGCGGCGAGgCG--CACGU- -5'
22946 5' -62.5 NC_005137.2 + 55572 0.74 0.208979
Target:  5'- aCGCGGGCgGCGCCGUg-CGCGUGgAg -3'
miRNA:   3'- cGCGCUCGaCGCGGCGagGCGCACgU- -5'
22946 5' -62.5 NC_005137.2 + 62212 0.68 0.453019
Target:  5'- -aGCGAGUuUGCGCUGCcgcgaucugUCCGC-UGCAc -3'
miRNA:   3'- cgCGCUCG-ACGCGGCG---------AGGCGcACGU- -5'
22946 5' -62.5 NC_005137.2 + 63799 0.68 0.471034
Target:  5'- gGCGCGAcGCgaugcGCGaCCGUcgCCGCGgcgGCGu -3'
miRNA:   3'- -CGCGCU-CGa----CGC-GGCGa-GGCGCa--CGU- -5'
22946 5' -62.5 NC_005137.2 + 67697 0.68 0.480176
Target:  5'- gGCGCGcGUUuGUGCCGCcUCGCG-GCGu -3'
miRNA:   3'- -CGCGCuCGA-CGCGGCGaGGCGCaCGU- -5'
22946 5' -62.5 NC_005137.2 + 72345 1.09 0.000616
Target:  5'- uGCGCGAGCUGCGCCGCUCCGCGUGCAc -3'
miRNA:   3'- -CGCGCUCGACGCGGCGAGGCGCACGU- -5'
22946 5' -62.5 NC_005137.2 + 87261 0.66 0.565823
Target:  5'- gGCGCuuGUUgGCGuuGUuaacggCCGCGUGCAc -3'
miRNA:   3'- -CGCGcuCGA-CGCggCGa-----GGCGCACGU- -5'
22946 5' -62.5 NC_005137.2 + 87478 0.73 0.229855
Target:  5'- -gGCcAGCUGCGCCGUUUCGCGacGCGc -3'
miRNA:   3'- cgCGcUCGACGCGGCGAGGCGCa-CGU- -5'
22946 5' -62.5 NC_005137.2 + 89093 0.67 0.498714
Target:  5'- gGCGCGGGCgaaacGCGCgUGUUuaGCGUGUu -3'
miRNA:   3'- -CGCGCUCGa----CGCG-GCGAggCGCACGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.